Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0749
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    27   1.6  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   2.1  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   4.8  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   4.8  

>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 240 KRTLIS*QLIQNVMITRSFKNRLSSIQQSLVQNKFDNNNFNIHI 371
           KR+LIS Q++    + +     L +++  L+ N F   NF   I
Sbjct: 95  KRSLISSQIVNQRQVVQEQMYFLCNLKNCLIDNNFPTGNFYYEI 138


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 297 KNRLSSIQQSLVQNKFDNNNFNIHIAI-IEYFKTR 398
           KN   +I+QS     FD NN+N ++ + + YF T+
Sbjct: 16  KNYELAIEQSKKALSFDANNYNANVFLGVAYFSTK 50


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 309 SSIQQSLVQNKFDNNNFNIHIA 374
           S +++ L+  K DNNN +IHI+
Sbjct: 533 SIVERYLISKKNDNNNESIHIS 554


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/58 (25%), Positives = 33/58 (56%)
 Frame = +3

Query: 219 IYL*FTSKRTLIS*QLIQNVMITRSFKNRLSSIQQSLVQNKFDNNNFNIHIAIIEYFK 392
           I++   S+ + IS  ++   + T S+K  +  +++ L+ NKF++  F   +A++ Y K
Sbjct: 612 IFIDENSEASTISKGVVLKYLETISYKVSIIYLEKLLLDNKFNDTVFPTRLALL-YLK 668


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,321
Number of Sequences: 5004
Number of extensions: 34845
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)