Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0749
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0201 - 19225597-19225890,19227832-19228030,19228133-192283...    30   1.6  
05_01_0230 - 1725118-1725357,1725474-1726385                           28   6.5  

>01_05_0201 -
           19225597-19225890,19227832-19228030,19228133-19228321,
           19228475-19228785,19228899-19229030
          Length = 374

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 264 LIQNVMITRSFKNRLSSIQQSLVQNKFDNNNFNIHIAIIEYFK 392
           L Q+    RSF + +S I+ SL Q    +N  N+HI   + F+
Sbjct: 136 LPQSNTCLRSFPSNISEIKSSLRQKYASHNKINVHIESADSFE 178


>05_01_0230 - 1725118-1725357,1725474-1726385
          Length = 383

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 351 NNFNIHIAIIEYFKTRC 401
           NNF  H  IIEYFK  C
Sbjct: 297 NNFGSHETIIEYFKNLC 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,841,637
Number of Sequences: 37544
Number of extensions: 162917
Number of successful extensions: 234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)