Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0747
(586 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 104 4e-23
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 103 1e-22
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 103 1e-22
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 103 1e-22
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 101 4e-22
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 100 6e-22
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 100 6e-22
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 100 6e-22
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 99 2e-21
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 98 4e-21
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 98 4e-21
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 95 3e-20
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 95 3e-20
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 93 9e-20
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 68 2e-16
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 82 2e-16
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 71 6e-13
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 70 1e-12
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 70 1e-12
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 69 3e-12
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 50 1e-11
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 66 2e-11
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 66 2e-11
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 65 3e-11
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 64 7e-11
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 47 7e-11
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 64 9e-11
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 64 9e-11
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 63 1e-10
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 63 1e-10
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 63 1e-10
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 63 2e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 63 2e-10
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 63 2e-10
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 62 3e-10
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 62 3e-10
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 62 3e-10
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 62 3e-10
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 61 6e-10
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 61 6e-10
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 61 6e-10
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 61 6e-10
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 60 8e-10
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 60 8e-10
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 60 8e-10
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 60 1e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 60 1e-09
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 59 2e-09
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 59 2e-09
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 59 2e-09
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 59 2e-09
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 58 4e-09
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 58 4e-09
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 58 4e-09
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 58 6e-09
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 57 8e-09
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 57 1e-08
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 57 1e-08
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 57 1e-08
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 56 1e-08
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 56 1e-08
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 56 1e-08
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 56 1e-08
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 56 1e-08
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 56 1e-08
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 56 2e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 56 2e-08
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 56 2e-08
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 55 3e-08
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 55 3e-08
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 55 3e-08
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 55 3e-08
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 55 3e-08
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 55 4e-08
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 55 4e-08
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 55 4e-08
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 54 5e-08
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 54 7e-08
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 54 7e-08
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 54 7e-08
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 54 7e-08
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 54 7e-08
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 53 2e-07
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 53 2e-07
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 53 2e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 52 2e-07
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 52 3e-07
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 51 5e-07
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 51 5e-07
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 51 5e-07
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 51 7e-07
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 50 9e-07
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 50 1e-06
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 50 2e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 50 2e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 49 2e-06
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 49 2e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 49 2e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 49 3e-06
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 49 3e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 3e-06
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 48 3e-06
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 48 5e-06
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 48 5e-06
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 48 6e-06
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 48 6e-06
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 48 6e-06
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 48 6e-06
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 47 8e-06
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 47 8e-06
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 47 8e-06
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 47 1e-05
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 47 1e-05
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 47 1e-05
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 47 1e-05
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 46 1e-05
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 46 1e-05
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 46 1e-05
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 46 2e-05
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 46 2e-05
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 46 2e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 46 2e-05
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 46 2e-05
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 45 3e-05
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 45 3e-05
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 45 4e-05
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 45 4e-05
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 45 4e-05
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 44 6e-05
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 44 6e-05
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 44 6e-05
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 44 6e-05
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 44 6e-05
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 44 7e-05
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 44 7e-05
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 44 7e-05
At2g47310.1 68415.m05906 flowering time control protein-related ... 44 1e-04
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 44 1e-04
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 44 1e-04
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 43 1e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 2e-04
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 42 2e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 42 2e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 42 2e-04
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 42 2e-04
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 42 3e-04
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 42 4e-04
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 41 5e-04
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 41 7e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 40 0.001
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 40 0.001
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 40 0.002
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 40 0.002
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 40 0.002
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 40 0.002
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 40 0.002
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 40 0.002
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 39 0.002
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 39 0.002
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 39 0.003
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 38 0.004
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 38 0.004
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 38 0.004
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 38 0.005
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 38 0.007
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 38 0.007
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 38 0.007
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 37 0.009
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 37 0.011
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 36 0.015
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.015
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.015
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.015
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 36 0.020
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 35 0.035
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 35 0.035
At5g51300.2 68418.m06360 splicing factor-related contains simila... 35 0.046
At5g51300.1 68418.m06359 splicing factor-related contains simila... 35 0.046
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 35 0.046
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 35 0.046
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 35 0.046
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 35 0.046
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 34 0.061
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 34 0.061
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 34 0.061
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 34 0.080
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 34 0.080
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 34 0.080
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 34 0.080
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 34 0.080
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 34 0.080
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 33 0.14
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 33 0.14
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 33 0.14
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 33 0.19
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 33 0.19
At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ... 32 0.24
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 32 0.24
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 32 0.32
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 32 0.32
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 32 0.32
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 32 0.32
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 32 0.32
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 31 0.43
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 31 0.43
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 31 0.43
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 31 0.57
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 0.75
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 31 0.75
At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing ... 30 0.99
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 30 0.99
At2g33440.1 68415.m04099 splicing factor family protein similar ... 30 0.99
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 30 1.3
At4g16810.1 68417.m02538 expressed protein similar to vernalizat... 30 1.3
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 30 1.3
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 29 1.7
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 29 1.7
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 1.7
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ... 29 1.7
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 29 1.7
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 29 2.3
At2g47390.1 68415.m05915 expressed protein 29 2.3
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 29 3.0
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 29 3.0
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 28 4.0
At5g03480.1 68418.m00304 expressed protein ; expression support... 28 4.0
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 28 4.0
At5g22830.1 68418.m02669 magnesium transporter CorA-like family ... 28 5.3
At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing ... 28 5.3
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 27 7.0
At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing ... 27 7.0
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 27 7.0
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 27 7.0
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 7.0
At1g04950.2 68414.m00493 TATA box-binding protein-associated fac... 27 7.0
At1g04950.1 68414.m00492 TATA box-binding protein-associated fac... 27 7.0
At5g49760.1 68418.m06163 leucine-rich repeat family protein / pr... 27 9.2
At1g09810.1 68414.m01101 expressed protein contains Pfam profile... 27 9.2
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 104 bits (250), Expect = 4e-23
Identities = 56/154 (36%), Positives = 86/154 (55%), Gaps = 25/154 (16%)
Frame = +3
Query: 198 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 377
D KLFVGG+SWET + +LR+HF YGE+ V D TGR RGF F++F P +D+V
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63
Query: 378 MAAGEHTINNKKVDPKKAKARH-------------------------GKIFVGGLSSEIS 482
+ +H+I+ ++VD K+A +R KIFVGGL ++
Sbjct: 64 LQE-KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLT 122
Query: 483 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
D+E R +F +G + +V + +D+ N+ +GF F+
Sbjct: 123 DEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFV 156
Score = 68.5 bits (160), Expect = 3e-12
Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Frame = +3
Query: 102 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRD---DDRKLFVGGLSWETTDKELRDHFGA 272
+++ ++ + G + + N++ + G D +K+FVGGL TD+E R +F
Sbjct: 73 REVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEV 132
Query: 273 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKI 452
YG + + + D T R RGF F+ F + +++D V+ H ++ K+V+ K+A +
Sbjct: 133 YGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANP 192
Query: 453 FVGGLS 470
GG S
Sbjct: 193 GGGGRS 198
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 103 bits (246), Expect = 1e-22
Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 11/156 (7%)
Frame = +3
Query: 150 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 329
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 330 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KARHG---------KIFVGGLSSE 476
GF FI F P +DKV+ H IN K+V+ K+ K G KIFVGG+ S
Sbjct: 61 GFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPST 119
Query: 477 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+++DE+++FF+++G ++E ++ D N+ +GF F+
Sbjct: 120 VTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFV 155
Score = 65.7 bits (153), Expect = 2e-11
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 384 AG------EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 518
G + + KK +PKK+ R + S+D ++ +G
Sbjct: 169 KGNMIDMADTQVEIKKAEPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYG 219
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 103 bits (246), Expect = 1e-22
Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 11/156 (7%)
Frame = +3
Query: 150 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 329
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 330 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KARHG---------KIFVGGLSSE 476
GF FI F P +DKV+ H IN K+V+ K+ K G KIFVGG+ S
Sbjct: 61 GFGFITFADPSVVDKVI-EDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPST 119
Query: 477 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+++DE+++FF+++G ++E ++ D N+ +GF F+
Sbjct: 120 VTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFV 155
Score = 60.5 bits (140), Expect = 8e-10
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 384 AG 389
G
Sbjct: 169 KG 170
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 103 bits (246), Expect = 1e-22
Identities = 62/175 (35%), Positives = 96/175 (54%), Gaps = 17/175 (9%)
Frame = +3
Query: 111 TTDNQLNGNA--ENGG---GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 275
T D++ NG A + GG S DH + + KLFVGG+SWETT + ++FG +
Sbjct: 31 TFDDRRNGGAAVDTGGIQMKHSVDHRHSSS-SMSSPGKLFVGGVSWETTAETFANYFGKF 89
Query: 276 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK---------- 425
GE+ + TD TG RGF F+ F +KV+ +H I+++KVD K
Sbjct: 90 GEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE-DHVIDDRKVDLKRTLPRGDKDT 148
Query: 426 --KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
KA ++ KIFVGGL + +DE++N+F +G I+E ++ +D + +GF F+
Sbjct: 149 DIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFV 203
Score = 68.9 bits (161), Expect = 2e-12
Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
RK+FVGGL + EL+++F YG+I + D +TGRSRGF F+ F+ +S+D++ +
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS 216
Query: 384 AGE-HTINNKKVDPKKAKAR 440
G+ H + +K+V+ K+A+ +
Sbjct: 217 DGKVHELGDKQVEIKRAEPK 236
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 101 bits (242), Expect = 4e-22
Identities = 60/170 (35%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
Frame = +3
Query: 102 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGE 281
+D D + + + E+ SQ H+ G D K+FVGGL+ ETT E HFG YGE
Sbjct: 11 EDEIHDPKPSEDIEDDDDKSQPHSGG---GVDSAGKIFVGGLARETTSAEFLKHFGKYGE 67
Query: 282 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG----- 446
I + D TG+ RGF F+ + +DKV+ H I K+V+ K+ R
Sbjct: 68 ITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI-QDNHIIIGKQVEIKRTIPRGSMSSND 126
Query: 447 ----KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
KIFVGG+ S + DDE + FF +FG + E ++ D + + +GF F+
Sbjct: 127 FKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFV 176
Score = 62.1 bits (144), Expect = 3e-10
Identities = 26/80 (32%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
+K+FVGG+ D E ++ F +GE++ + D +TGRSRGF F+ +++ + +D ++A
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLA 189
Query: 384 AGEH-TINNKKVDPKKAKAR 440
G ++ +V+ KKA+ +
Sbjct: 190 KGNRIELSGTQVEIKKAEPK 209
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 100 bits (240), Expect = 6e-22
Identities = 58/151 (38%), Positives = 86/151 (56%), Gaps = 25/151 (16%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 387 GEHTINNKKVDPKKAKAR-------------------HG------KIFVGGLSSEISDDE 491
+H I+ + V+ KKA R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 492 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+N+F +FGTI +V + +D + +GF FI
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 156
Score = 67.7 bits (158), Expect = 5e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 384 AGEHTINNKKVDPKKA 431
H +N K V+ K+A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 45.2 bits (102), Expect = 3e-05
Identities = 16/47 (34%), Positives = 32/47 (68%)
Frame = +3
Query: 444 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
GK+F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFI 52
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 100 bits (240), Expect = 6e-22
Identities = 58/151 (38%), Positives = 86/151 (56%), Gaps = 25/151 (16%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 387 GEHTINNKKVDPKKAKAR-------------------HG------KIFVGGLSSEISDDE 491
+H I+ + V+ KKA R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 492 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+N+F +FGTI +V + +D + +GF FI
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 156
Score = 67.7 bits (158), Expect = 5e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 384 AGEHTINNKKVDPKKA 431
H +N K V+ K+A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 45.2 bits (102), Expect = 3e-05
Identities = 16/47 (34%), Positives = 32/47 (68%)
Frame = +3
Query: 444 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
GK+F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFI 52
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 100 bits (240), Expect = 6e-22
Identities = 58/151 (38%), Positives = 86/151 (56%), Gaps = 25/151 (16%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 387 GEHTINNKKVDPKKAKAR-------------------HG------KIFVGGLSSEISDDE 491
+H I+ + V+ KKA R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 492 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+N+F +FGTI +V + +D + +GF FI
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 156
Score = 67.7 bits (158), Expect = 5e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 384 AGEHTINNKKVDPKKA 431
H +N K V+ K+A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 45.2 bits (102), Expect = 3e-05
Identities = 16/47 (34%), Positives = 32/47 (68%)
Frame = +3
Query: 444 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
GK+F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFI 52
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 98.7 bits (235), Expect = 2e-21
Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 28/154 (18%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
KLF+GG+SW+T ++ L+++FG YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-M 74
Query: 387 GEHTINNKKVDPKKAKAR-------------------HG---------KIFVGGLSSEIS 482
+H I+ + V+ KKA R HG KIFVGGL S I+
Sbjct: 75 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSIT 134
Query: 483 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+ E +N+F +FGTI +V + +D + +GF FI
Sbjct: 135 EAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFI 168
Score = 68.5 bits (160), Expect = 3e-12
Identities = 32/76 (42%), Positives = 46/76 (60%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
+K+FVGGL T+ E +++F +G I + V D NT R RGF FI F + ES+D V+
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181
Query: 384 AGEHTINNKKVDPKKA 431
H +N K V+ K+A
Sbjct: 182 KTFHELNGKMVEVKRA 197
Score = 43.6 bits (98), Expect = 1e-04
Identities = 15/47 (31%), Positives = 32/47 (68%)
Frame = +3
Query: 444 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
GK+F+GG+S + ++ ++ +F ++G ++E + D+T + +GF FI
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFI 61
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 97.9 bits (233), Expect = 4e-21
Identities = 54/147 (36%), Positives = 84/147 (57%), Gaps = 21/147 (14%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 387 GEHTINNKKVDPKKAKARHG---------------------KIFVGGLSSEISDDEIRNF 503
+H I+ K V+ KKA R KIFVGGL+S +++ E + +
Sbjct: 67 -KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 504 FSEFGTILEVEMPFDKTKNQRKGFCFI 584
F++FG I +V + +D + +GF FI
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFI 152
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +3
Query: 183 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 362
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 363 SIDKVMAAGEHTINNKKVDPKKA 431
++DKV+ H +N K V+ K A
Sbjct: 159 AVDKVLQKTFHELNGKMVEVKLA 181
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 97.9 bits (233), Expect = 4e-21
Identities = 54/147 (36%), Positives = 84/147 (57%), Gaps = 21/147 (14%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 387 GEHTINNKKVDPKKAKARHG---------------------KIFVGGLSSEISDDEIRNF 503
+H I+ K V+ KKA R KIFVGGL+S +++ E + +
Sbjct: 67 -KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 504 FSEFGTILEVEMPFDKTKNQRKGFCFI 584
F++FG I +V + +D + +GF FI
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFI 152
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +3
Query: 183 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 362
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 363 SIDKVMAAGEHTINNKKVDPKKA 431
++DKV+ H +N K V+ K A
Sbjct: 159 AVDKVLQKTFHELNGKMVEVKLA 181
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 95.1 bits (226), Expect = 3e-20
Identities = 49/154 (31%), Positives = 86/154 (55%), Gaps = 23/154 (14%)
Frame = +3
Query: 192 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 371
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVA 60
Query: 372 KVMAAGEHTINNKKVDPKKA-----------------------KARHGKIFVGGLSSEIS 482
+++ +H I+ + V+ KKA R KIFVGGL S ++
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 483 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+ + + +F +FGT +V + +D + +GF FI
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFI 154
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/99 (36%), Positives = 52/99 (52%)
Frame = +3
Query: 135 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 314
N N S S PGR RK+FVGGL T+ + + +F +G + V D N
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
Query: 315 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 431
T R RGF FI + + E+++KV+ H +N K V+ K+A
Sbjct: 145 TQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 95.1 bits (226), Expect = 3e-20
Identities = 49/154 (31%), Positives = 86/154 (55%), Gaps = 23/154 (14%)
Frame = +3
Query: 192 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 371
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVA 60
Query: 372 KVMAAGEHTINNKKVDPKKA-----------------------KARHGKIFVGGLSSEIS 482
+++ +H I+ + V+ KKA R KIFVGGL S ++
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 483 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+ + + +F +FGT +V + +D + +GF FI
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFI 154
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/99 (36%), Positives = 52/99 (52%)
Frame = +3
Query: 135 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 314
N N S S PGR RK+FVGGL T+ + + +F +G + V D N
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
Query: 315 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 431
T R RGF FI + + E+++KV+ H +N K V+ K+A
Sbjct: 145 TQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 93.5 bits (222), Expect = 9e-20
Identities = 52/154 (33%), Positives = 81/154 (52%), Gaps = 25/154 (16%)
Frame = +3
Query: 198 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 377
D KLF+GG+SW+T + LR++F +GE+ + V + TGR RGF F+ F P ID+V
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV 63
Query: 378 MAAGEHTINNKKVDPKKAKARH-------------------------GKIFVGGLSSEIS 482
+ +H I+N+ VD K+A +R KIFVGGL ++
Sbjct: 64 L-QDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALT 122
Query: 483 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
DE R +F +G + + + D+T + +GF F+
Sbjct: 123 SDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFV 156
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/76 (38%), Positives = 43/76 (56%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
+K+FVGGL T E R +F YG + + D T R RGF F+ F + +S+D V+
Sbjct: 110 KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLH 169
Query: 384 AGEHTINNKKVDPKKA 431
H +N K+V+ K+A
Sbjct: 170 KTFHDLNGKQVEVKRA 185
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 68.1 bits (159), Expect = 4e-12
Identities = 29/81 (35%), Positives = 51/81 (62%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
+K+FVGGLS TT++E + +F +G + V D T R RGF F+ + + +S++ VM
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
Query: 384 AGEHTINNKKVDPKKAKARHG 446
+ H +++K+V+ K+A + G
Sbjct: 180 SNFHELSDKRVEVKRAIPKEG 200
Score = 56.4 bits (130), Expect(2) = 2e-16
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +3
Query: 195 DDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 371
D DR KLFVGG++ ET+++ L+ +F YG + V + TG+ RGF F+ F +
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVV 61
Query: 372 KVMAAGEHTINNKKVDPKKAKARH 443
K + H I K VD +KA +H
Sbjct: 62 KAL-RDTHFILGKPVDVRKAIRKH 84
Score = 46.4 bits (105), Expect(2) = 2e-16
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +3
Query: 435 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+R KIFVGGLSS +++E +++F FG +V + D N+ +GF F+
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFV 166
Score = 44.8 bits (101), Expect = 4e-05
Identities = 16/46 (34%), Positives = 31/46 (67%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVGG++ E S++ ++ +FS +G +LE + +K + +GF F+
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFV 52
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 82.2 bits (194), Expect = 2e-16
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Frame = +3
Query: 201 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 380
+RKL V G+ W+ L+D+ +G++E V D +TGRSRGF ++ F + E +
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 381 AAGEHTINNKKVDPKKAKARH---------GKIFVGGLSSEISDDEIRNFFSEFGTILEV 533
GEH + N+ ++ K A + +IFV + S +S+ + R+ F +G I ++
Sbjct: 62 -KGEHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDL 120
Query: 534 EMPFDKTKNQRKGFCFI 584
MP D Q +G FI
Sbjct: 121 YMPKDYNSKQHRGIGFI 137
Score = 51.2 bits (117), Expect = 5e-07
Identities = 28/83 (33%), Positives = 40/83 (48%)
Frame = +3
Query: 168 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 347
+ E R K+FVG L E + +LRD+FG +G I+ + DP RGF F+
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVT 287
Query: 348 FKAPESIDKVMAAGEHTINNKKV 416
F D+V A H I ++V
Sbjct: 288 FAENGVADRV-ARRSHEICGQEV 309
Score = 45.2 bits (102), Expect = 3e-05
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 380
++FV + ++ + R HF YGEI + + D N+ + RG FI F + +S++ +M
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLM 149
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
KIFVG L E S D++R++F FG I + +P D ++ +GF F+
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFV 286
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 70.9 bits (166), Expect = 6e-13
Identities = 46/143 (32%), Positives = 67/143 (46%), Gaps = 19/143 (13%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
RK+FV GL W+T L D F YGEIE D +G+S+G+ FI+FK+ +
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 384 AGEHTINNKKV------------DPKKAKARH-------GKIFVGGLSSEISDDEIRNFF 506
+ I + +P A A+H KI+V +S++I ++ FF
Sbjct: 188 QPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF 247
Query: 507 SEFGTILEVEMPFDKTKNQRKGF 575
S FG I E + DK + KGF
Sbjct: 248 SRFGEIEEGPLGLDKATGRPKGF 270
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/76 (31%), Positives = 39/76 (51%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
RK++V +S + ++L + F +GEIE + D TGR +GFA V+++ ES K +
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
Query: 384 AGEHTINNKKVDPKKA 431
T + KA
Sbjct: 287 EPHKTFEGHVLHCHKA 302
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 69.7 bits (163), Expect = 1e-12
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +3
Query: 183 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 362
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 26 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 85
Query: 363 SIDKVMAAGEHTINNKKVDPKKA 431
++DKV+ H +N K V+ K A
Sbjct: 86 AVDKVLQKTFHELNGKMVEVKLA 108
Score = 48.4 bits (110), Expect = 3e-06
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = +3
Query: 372 KVMAAGEHTINNKK---VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 542
K + +H + NK + + KIFVGGL+S +++ E + +F++FG I +V +
Sbjct: 6 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVM 65
Query: 543 FDKTKNQRKGFCFI 584
+D + +GF FI
Sbjct: 66 YDHRTQRPRGFGFI 79
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 69.7 bits (163), Expect = 1e-12
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
K+FVGGL+WET + LR HF YGEI V D NTGRS+G+ F+ F+ PE+ + A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 387 GEHTINNKKVD 419
I+ ++ +
Sbjct: 85 PTPIIDGRRAN 95
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVGGL+ E + +R F ++G ILE + DK + KG+ F+
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFV 70
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 68.5 bits (160), Expect = 3e-12
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 365
K+FVGGL+WET + LR HF YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVGGL+ E + +R F ++G ILE + DK + KG+ F+
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFV 70
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Frame = +3
Query: 117 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESIN 296
D G + G + G +++VG LSW D L F G++
Sbjct: 175 DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEAR 234
Query: 297 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKVDPKKAKAR 440
V D ++GRS+GF F+ + + + + + + + ++ +++ +A+AR
Sbjct: 235 VIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 48.0 bits (109), Expect(2) = 1e-11
Identities = 28/82 (34%), Positives = 41/82 (50%)
Frame = +3
Query: 201 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 380
D KLFVG L + +L F + G +E + V D TGRSRGF F+ S+ +V
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVE 146
Query: 381 AAGEHTINNKKVDPKKAKARHG 446
AA + N ++D + + G
Sbjct: 147 AAAQQ-FNGYELDGRPLRVNAG 167
Score = 38.7 bits (86), Expect(2) = 1e-11
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+++VG LS + D + + FSE G ++E + +D+ + KGF F+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFV 250
Score = 34.3 bits (75), Expect = 0.061
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVG L + ++ F G + VE+ +DK + +GF F+
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFV 137
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/71 (39%), Positives = 45/71 (63%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 387 GEHTINNKKVD 419
I+ +K +
Sbjct: 78 PNPVIDGRKAN 88
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFV 63
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/71 (39%), Positives = 45/71 (63%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 387 GEHTINNKKVD 419
I+ +K +
Sbjct: 78 PNPVIDGRKAN 88
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFV 63
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 65.3 bits (152), Expect = 3e-11
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +3
Query: 195 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 374
D + + F+GGL+W T+D+ LRD F YG + V D +GRSRGF FI F +++D+
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 375 VMAA-GEHTINNKKVDPKKAKARHG 446
+AA ++ + + KA+ G
Sbjct: 64 AIAAMNGMDLDGRTITVDKAQPHQG 88
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+ F+GGL+ SD +R+ F ++G ++E ++ DK + +GF FI
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFI 53
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 64.1 bits (149), Expect = 7e-11
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +3
Query: 180 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 356
E+ RD R +FV G W+TT + L+ F +YGEIE +V D +TGR +G+ F++FK
Sbjct: 399 ESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKT 458
Query: 357 PESIDKVMAAGEHTINNKKVDPKKAKARHGK 449
+ + + E + N+ V A + GK
Sbjct: 459 RKGAREALKRPEKRMYNRIVVCNLASEKPGK 489
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
IFV G + + + ++ F +G I E + DK + KG+ F+
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFV 454
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 47.2 bits (107), Expect = 8e-06
Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Frame = +3
Query: 162 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 341
Q H + + DD + L+VG L + L F GE+ S+ V + T +S G+ F
Sbjct: 94 QQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGF 153
Query: 342 IVFKAPESIDKVMAAGEHTINNKKVDP-----------KKAKARHG---KIFVGGLSSEI 479
+ F + + ++V+ ++ P +K +G +FVG LS ++
Sbjct: 154 VEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDV 213
Query: 480 SDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFI 584
+D + FS+ + ++ ++ D + KG+ F+
Sbjct: 214 TDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFV 249
Score = 43.2 bits (97), Expect(2) = 7e-11
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 201 DRKLFVGGLSWETTDKELRDHFG-AYGEIESINVKTDPNTGRSRGFAFIVF 350
D +FVG LS + TD L + F Y ++S V D NTGRS+G+ F+ F
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRF 251
Score = 40.7 bits (91), Expect(2) = 7e-11
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +3
Query: 363 SIDKVMAAGEHTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 536
S V+ AG H N ++ + IFVGG+ ++ D+++R FS+FG ++ V+
Sbjct: 292 SSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVK 351
Query: 537 MPFDK 551
+P K
Sbjct: 352 IPVGK 356
Score = 36.7 bits (81), Expect = 0.011
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +3
Query: 144 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 320
+G S + S ++ G + +FVGG+ + D++LR F +GE+ S+ + G
Sbjct: 302 HGSNGSMGYGS-QSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCG 359
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 63.7 bits (148), Expect = 9e-11
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 12/136 (8%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----------K 353
RKLF+ GL+ +TT + LR F +YG++E V D TG+S+G+ F+ F K
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 354 AP-ESID-KVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 527
P + ID +V N+ + A KI+V + ++ D + N F +G +
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194
Query: 528 EVEMPFDKTKNQRKGF 575
E + FDK + +GF
Sbjct: 195 EGPLGFDKVTGKSRGF 210
Score = 51.2 bits (117), Expect = 5e-07
Identities = 26/76 (34%), Positives = 41/76 (53%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
RK++V + ++ L +HF AYG++E + D TG+SRGFA V+K E +A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Query: 384 AGEHTINNKKVDPKKA 431
I+ K ++ K A
Sbjct: 227 DPVKVIDGKHLNCKLA 242
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 63.7 bits (148), Expect = 9e-11
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 12/136 (8%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----------K 353
RKLF+ GL+ +TT + LR F +YG++E V D TG+S+G+ F+ F K
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 354 AP-ESID-KVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 527
P + ID +V N+ + A KI+V + ++ D + N F +G +
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194
Query: 528 EVEMPFDKTKNQRKGF 575
E + FDK + +GF
Sbjct: 195 EGPLGFDKVTGKSRGF 210
Score = 51.2 bits (117), Expect = 5e-07
Identities = 26/76 (34%), Positives = 41/76 (53%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
RK++V + ++ L +HF AYG++E + D TG+SRGFA V+K E +A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Query: 384 AGEHTINNKKVDPKKA 431
I+ K ++ K A
Sbjct: 227 DPVKVIDGKHLNCKLA 242
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 63.3 bits (147), Expect = 1e-10
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 25/150 (16%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+ +
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 384 AGEHTINNKKVDPK------------------KAKARHG-------KIFVGGLSSEISDD 488
+ I ++ + A A+H KI+V + +E+
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 489 EIRNFFSEFGTILEVEMPFDKTKNQRKGFC 578
++ FFS+FG I E + DK + KGFC
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFC 289
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 384 AGEHTINNKKVDPKKA 431
T + +KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
Score = 36.7 bits (81), Expect = 0.011
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 441 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
H KIFV GL + + + F ++G I + + FDK + KG+ FI
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 63.3 bits (147), Expect = 1e-10
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 25/150 (16%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+ +
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 384 AGEHTINNKKVDPK------------------KAKARHG-------KIFVGGLSSEISDD 488
+ I ++ + A A+H KI+V + +E+
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 489 EIRNFFSEFGTILEVEMPFDKTKNQRKGFC 578
++ FFS+FG I E + DK + KGFC
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFC 289
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 384 AGEHTINNKKVDPKKA 431
T + +KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
Score = 36.7 bits (81), Expect = 0.011
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 441 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
H KIFV GL + + + F ++G I + + FDK + KG+ FI
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 63.3 bits (147), Expect = 1e-10
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 25/150 (16%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+ +
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 384 AGEHTINNKKVDPK------------------KAKARHG-------KIFVGGLSSEISDD 488
+ I ++ + A A+H KI+V + +E+
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 489 EIRNFFSEFGTILEVEMPFDKTKNQRKGFC 578
++ FFS+FG I E + DK + KGFC
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFC 289
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 384 AGEHTINNKKVDPKKA 431
T + +KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
Score = 36.7 bits (81), Expect = 0.011
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 441 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
H KIFV GL + + + F ++G I + + FDK + KG+ FI
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +3
Query: 120 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 293
N+L+G G S + G R KLFVGGLSW T D L+ F ++GE+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEA 64
Query: 294 NVKTDPNTGRSRGFAFIVFKAPESIDKVM 380
V D TGRSRGF F+ F +S + +
Sbjct: 65 TVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVGGLS D ++ F+ FG + E + D+ + +GF F+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFV 81
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +3
Query: 120 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 293
N+L+G G S + G R KLFVGGLSW T D L+ F ++GE+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEA 64
Query: 294 NVKTDPNTGRSRGFAFIVFKAPESIDKVM 380
V D TGRSRGF F+ F +S + +
Sbjct: 65 TVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVGGLS D ++ F+ FG + E + D+ + +GF F+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFV 81
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/71 (38%), Positives = 44/71 (61%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
K+FVGGL+WET E+R +F +GEI + TD TG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 387 GEHTINNKKVD 419
I+ +K +
Sbjct: 78 PNPVIDGRKAN 88
Score = 50.8 bits (116), Expect = 7e-07
Identities = 22/48 (45%), Positives = 31/48 (64%)
Frame = +3
Query: 441 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
H K+FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFV 63
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 62.1 bits (144), Expect = 3e-10
Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 25/187 (13%)
Frame = +3
Query: 99 AQDITTDNQLNGNAENG----GGDSQDHNS-------AEAPGRDDDRKLFVGGLSWETTD 245
+QD++ ++ G+A G G +S+ S AE P ++ KLFVG L+++
Sbjct: 104 SQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNS 163
Query: 246 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA-PESIDKVMAAGEHTINNKKVDP 422
+ L F G +E V + T +SRGF F+ + E+ V + +N + +
Sbjct: 164 QALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTV 223
Query: 423 KKAKARHG-------------KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQ 563
KA R +++VG L ++ + + FSE G ++E + +D+ +
Sbjct: 224 NKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGR 283
Query: 564 RKGFCFI 584
+GF F+
Sbjct: 284 SRGFGFV 290
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
+++VG L W+ + L F +G++ V D TGRSRGF F+ + +++ ++A
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 365
K+FVGGL+WET +R +F +GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Score = 45.2 bits (102), Expect = 3e-05
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
KIFVGGL+ E D +R +F +FG I+E + DK + KG+ F+
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFV 68
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 61.7 bits (143), Expect = 3e-10
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +3
Query: 180 EAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 356
E+ RD R +FV GL W+TT + L+ F YGEI +V D +TGR++GF F++FK
Sbjct: 154 ESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKT 213
Query: 357 PESIDKVMAAGEHTINNKKV 416
+ + E + N+ V
Sbjct: 214 RKGARAALKNPEKRMYNRTV 233
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
IFV GL + + + ++ F +G I E + DK + KGF F+
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFV 209
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 61.7 bits (143), Expect = 3e-10
Identities = 28/78 (35%), Positives = 42/78 (53%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
K+FVGG+S+ T + LR+ F YGE+ + D TGRSRGFAF+ F + E M
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 387 GEHTINNKKVDPKKAKAR 440
++ +++ A R
Sbjct: 95 DGQDLHGRRIRVNYATER 112
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
KIFVGG+S + +R FS++G +++ ++ D+ + +GF F+
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFV 80
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 60.9 bits (141), Expect = 6e-10
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +3
Query: 180 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 356
EA RD RK+FV GL WETT + L F YGEIE V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 357 PESIDKVMAAGEHTINNK 410
+ + + + I N+
Sbjct: 155 RKGAKEALKEPKKRILNR 172
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 60.9 bits (141), Expect = 6e-10
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +3
Query: 180 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 356
EA RD RK+FV GL WETT + L F YGEIE V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 357 PESIDKVMAAGEHTINNK 410
+ + + + I N+
Sbjct: 155 RKGAKEALKEPKKRILNR 172
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 60.9 bits (141), Expect = 6e-10
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 387 GEHTINNKKVD 419
I+ ++ +
Sbjct: 68 PAPVIDGRRAN 78
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVGGL+ E +RN+F +FG I+E + DK+ + KG+ F+
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFV 53
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 60.9 bits (141), Expect = 6e-10
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 387 GEHTINNKKVD 419
I+ ++ +
Sbjct: 68 PAPVIDGRRAN 78
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVGGL+ E +RN+F +FG I+E + DK+ + KG+ F+
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFV 53
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 60.5 bits (140), Expect = 8e-10
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 2/128 (1%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
++F+GGL + +++LRD GEI + + D ++G S+G+AF+ FK + K +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 387 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE-VEMPFDKTKNQ 563
K ++F+G + ++DE R + G +E +E+ D T
Sbjct: 177 LHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTT 236
Query: 564 R-KGFCFI 584
R +GF F+
Sbjct: 237 RNRGFAFV 244
Score = 39.5 bits (88), Expect = 0.002
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGE-IESINVKTDP-NTGRSRGFAFIVFK----APESI 368
+LF+G + T+ E R G +E+I + DP NT R+RGFAF+++ A S
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 369 DKVMAAGEHTINNKK----VDPKK------AKARHGKIFVGGLSSEISDDEIRNFFSEFG 518
K++ + N DPK A A+ ++V + S ++++ F G
Sbjct: 257 QKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHG 316
Query: 519 TILEVEMPFDKTKNQRKGF 575
+ ++ P K + GF
Sbjct: 317 EVTKIVTPPGKGGKRDFGF 335
Score = 32.3 bits (70), Expect = 0.24
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +3
Query: 108 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIE 287
I ++ +L GNA + + + L+V + T+ ++L++ F +GE+
Sbjct: 260 IDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVT 319
Query: 288 SINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAK 434
I T P G R F F+ + S K + E + +N + ++ AK
Sbjct: 320 KI--VTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAK 367
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 60.5 bits (140), Expect = 8e-10
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +3
Query: 195 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-D 371
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK +++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 372 KVMAAGEHTINNKKVDPKKAKAR 440
+ ++ + + +A++R
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSR 87
Score = 32.3 bits (70), Expect = 0.24
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+ FVGGL+ D + F+++G +++ ++ D+ + +GF F+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFV 54
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 60.5 bits (140), Expect = 8e-10
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +3
Query: 195 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-D 371
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK +++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 372 KVMAAGEHTINNKKVDPKKAKAR 440
+ ++ + + +A++R
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSR 87
Score = 32.3 bits (70), Expect = 0.24
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+ FVGGL+ D + F+++G +++ ++ D+ + +GF F+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFV 54
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 59.7 bits (138), Expect = 1e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+F+GGLS D +R+ F+ FG +++ ++ D+ + +GF F+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFV 81
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 59.7 bits (138), Expect = 1e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+F+GGLS D +R+ F+ FG +++ ++ D+ + +GF F+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFV 81
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 59.3 bits (137), Expect = 2e-09
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
KLF+GGLSW ++ L+D F ++GE+ + + D +GRSRGF F+ F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 46.4 bits (105), Expect = 1e-05
Identities = 17/46 (36%), Positives = 30/46 (65%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+F+GGLS + + +++ FS FG + EV + +DK + +GF F+
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFV 87
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 201 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKV 377
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F D +
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 378 MAAGEHTINNKKVDPKKAKARHG 446
+ NK + KA+ + G
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVG 93
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+IFVGGLS ++++ ++ + F +G I E ++ + + +GF FI
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFI 58
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +3
Query: 201 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKV 377
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F D +
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 378 MAAGEHTINNKKVDPKKAKARHG 446
+ NK + KA+ + G
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVG 93
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+IFVGGLS ++++ ++ + F +G I E ++ + + +GF FI
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFI 58
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 58.8 bits (136), Expect = 2e-09
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +3
Query: 171 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 68 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 123
Query: 351 KAPESIDKVMAAGEHTI-NNKKVDPKKAKARHGK 449
K+ ++ + + +H++ + + +KA+ R G+
Sbjct: 124 KSVGDANRCIRSLDHSVLQGRVITVEKARRRRGR 157
Score = 32.3 bits (70), Expect = 0.24
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
++V GLS +++ ++ + F++ G + +V + D + +GF FI
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFI 121
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 58.0 bits (134), Expect = 4e-09
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 387 GEHTINNKKVD 419
I+ ++ +
Sbjct: 74 ATPVIDGRRAN 84
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVGGL+ E + ++ F +FG ILE + DK + KG+ F+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFV 59
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 58.0 bits (134), Expect = 4e-09
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 387 GEHTINNKKVD 419
I+ ++ +
Sbjct: 74 ATPVIDGRRAN 84
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVGGL+ E + ++ F +FG ILE + DK + KG+ F+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFV 59
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 58.0 bits (134), Expect = 4e-09
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 387 GEHTINNKKVD 419
I+ ++ +
Sbjct: 74 ATPVIDGRRAN 84
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVGGL+ E + ++ F +FG ILE + DK + KG+ F+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFV 59
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 57.6 bits (133), Expect = 6e-09
Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 15/184 (8%)
Frame = +3
Query: 78 MANNDNFAQDIT-TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKEL 254
++ N+A++ D + G + + + P ++ KLFVG L ++ + L
Sbjct: 70 VSQTSNWAEEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQAL 129
Query: 255 RDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKA 431
F G +E V + +T +SRGF F+ E +K V +N +++ +A
Sbjct: 130 AMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA 189
Query: 432 KARHG-------------KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKG 572
R +I+VG L ++ + FSE G +++ + D+ + +G
Sbjct: 190 APRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRG 249
Query: 573 FCFI 584
F F+
Sbjct: 250 FGFV 253
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
+++VG L W+ L F +G++ V +D TGRSRGF F+ ++ +AA
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 57.2 bits (132), Expect = 8e-09
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +3
Query: 129 NGNAENGGGDSQDHNSAEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 302
+G+A GD + ++A D D +LFV L + T++EL +HF +G+I +++
Sbjct: 234 DGDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLV 293
Query: 303 TDPNTGRSRGFAFIVFKAPESIDKVM 380
D T RSRG A+I++ PE + M
Sbjct: 294 LDKETKRSRGIAYILYLIPECAARAM 319
Score = 38.7 bits (86), Expect = 0.003
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 20/153 (13%)
Frame = +3
Query: 186 PGRDDDRKLFVGGLSWETTDKELRDHFG---AYGEIESINVKTDPNTGR--SRGFAFIVF 350
P + L V LS++TTD+ L+ HF G+I S+ + + S G+ F+ F
Sbjct: 563 PDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEF 622
Query: 351 KAPESIDKVMAAGEHTI-----------NNKKVDPKKAKARHG----KIFVGGLSSEISD 485
+ E+ V + T+ NK+ D + K+ V ++ E +
Sbjct: 623 DSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATK 682
Query: 486 DEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
E+R FS FG I + +P K Q G+ F+
Sbjct: 683 RELRQLFSPFGQIKSMRLP-KKNIGQYAGYAFV 714
Score = 37.9 bits (84), Expect = 0.005
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
KL V +++E T +ELR F +G+I+S+ + N G+ G+AF+ F
Sbjct: 670 KLHVKNIAFEATKRELRQLFSPFGQIKSMRL-PKKNIGQYAGYAFVEF 716
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/79 (36%), Positives = 42/79 (53%)
Frame = +3
Query: 195 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 374
D + K++V GL W T + L +F +GEI V D T RS+GF F+ F+ ES +
Sbjct: 6 DRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATR 65
Query: 375 VMAAGEHTINNKKVDPKKA 431
HTI+ + V+ K A
Sbjct: 66 ACENPNHTIDGRTVNCKLA 84
Score = 30.7 bits (66), Expect = 0.75
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 438 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
R KI+V GL + + ++F FG I+ ++ D + KGF F+
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFV 55
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 56.8 bits (131), Expect = 1e-08
Identities = 36/158 (22%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Frame = +3
Query: 135 NAENGGGDSQDHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 305
+ + G DH S + R KLFVG + T++E+R +F +G + + +
Sbjct: 94 SGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153
Query: 306 DPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKVDPKKAK--ARHGKI 452
D TG+ +G F+ + + D+ + A G + + D ++ + K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 453 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQR 566
FVG L+ + ++ E+ F +FG + +V + D+ + R
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSR 251
Score = 45.2 bits (102), Expect = 3e-05
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVG + +++EIR +F + G +LEV + DK Q++G CF+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFV 166
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 56.8 bits (131), Expect = 1e-08
Identities = 36/158 (22%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Frame = +3
Query: 135 NAENGGGDSQDHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 305
+ + G DH S + R KLFVG + T++E+R +F +G + + +
Sbjct: 94 SGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153
Query: 306 DPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKVDPKKAK--ARHGKI 452
D TG+ +G F+ + + D+ + A G + + D ++ + K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 453 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQR 566
FVG L+ + ++ E+ F +FG + +V + D+ + R
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSR 251
Score = 45.2 bits (102), Expect = 3e-05
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVG + +++EIR +F + G +LEV + DK Q++G CF+
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFV 166
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 387 GEHTINNKKVD 419
+N K++D
Sbjct: 63 AIEEMNGKELD 73
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/46 (30%), Positives = 31/46 (67%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFV 52
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 387 GEHTINNKKVD 419
+N K++D
Sbjct: 63 AIEEMNGKELD 73
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/46 (30%), Positives = 31/46 (67%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFV 52
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 387 GEHTINNKKVD 419
+N K++D
Sbjct: 63 AIEEMNGKELD 73
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/46 (30%), Positives = 31/46 (67%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFV 52
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 56.4 bits (130), Expect = 1e-08
Identities = 35/138 (25%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
Frame = +3
Query: 195 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 374
++ KLFVG + ++ +L F + ++ +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 375 VMAA--------GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 530
++ A G +++ K + + K+FVG L +S+ E+++ FS++GTI +
Sbjct: 75 LVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 531 VEMPFDKTKNQRKGFCFI 584
+++ + KG F+
Sbjct: 135 LQI-LRGAQQTSKGCAFL 151
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
LF+ + E D+EL F ++G + S V D TG S+ F + F
Sbjct: 350 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 56.4 bits (130), Expect = 1e-08
Identities = 35/138 (25%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
Frame = +3
Query: 195 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 374
++ KLFVG + ++ +L F + ++ +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 375 VMAA--------GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 530
++ A G +++ K + + K+FVG L +S+ E+++ FS++GTI +
Sbjct: 75 LVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 531 VEMPFDKTKNQRKGFCFI 584
+++ + KG F+
Sbjct: 135 LQI-LRGAQQTSKGCAFL 151
Score = 31.5 bits (68), Expect = 0.43
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV--MA 383
LF+ + E D+EL F ++G + S V D TG S+ F F+ + + + M
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 384 AGEHTINNKKV 416
G H + KK+
Sbjct: 411 NGRH-LGGKKL 420
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/129 (20%), Positives = 70/129 (54%), Gaps = 3/129 (2%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE-SIDKVMA 383
++++GG+ + T+ +L+ G+ GE+ + + + ++G +G+AF+ F++ + + + +
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 384 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE-VEMPFD-KTK 557
K++ +A+H ++F+G + + +I+ + G ++ VE+P + +
Sbjct: 153 LNNTDFRGKRIKCSTTQAKH-RLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNM 211
Query: 558 NQRKGFCFI 584
+ +GF FI
Sbjct: 212 GRNRGFAFI 220
Score = 35.1 bits (77), Expect = 0.035
Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 441 HG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
HG ++++GG+ ++ ++ +++ F G + EV + +K KG+ F+
Sbjct: 90 HGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFV 138
Score = 33.1 bits (72), Expect = 0.14
Identities = 29/142 (20%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGE-IESINVKTDP-NTGRSRGFAFIVF---KAPESID 371
+LF+G + + +++ G ++ + + +P N GR+RGFAFI + E
Sbjct: 173 RLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEYYNHACAEYSK 232
Query: 372 KVMAAGEHTINNKKVDPKKAKARHG-----------KIFVGGLSSEISDDEIRNFFSEFG 518
+ M+ +++ A++R G +++ L +I+ + ++ F G
Sbjct: 233 QKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHG 292
Query: 519 TILEVEMPFDKTKNQRKGFCFI 584
IL+V +P K + + F+
Sbjct: 293 KILKVVIPPAKPGKEDSRYGFV 314
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 56.0 bits (129), Expect = 2e-08
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 13/168 (7%)
Frame = +3
Query: 120 NQLNGNAENGGGDSQDHNSAEAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIESIN 296
N+LN A NG ++ + R +F+ L K L + F A+G I S
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 297 VKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-----------DPKKAKAR 440
V DP+ G+S+G+ F+ + E+ + +N+K+V DP K +
Sbjct: 164 VAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVK 222
Query: 441 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
++V LS +SD+E+ F EFG + D + + KGF F+
Sbjct: 223 FTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFV 269
Score = 50.4 bits (115), Expect = 9e-07
Identities = 25/67 (37%), Positives = 34/67 (50%)
Frame = +3
Query: 180 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 359
EA + L+V L TD +LR+HF +G I S V DP +G SRG F+ F P
Sbjct: 319 EAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTP 377
Query: 360 ESIDKVM 380
E + +
Sbjct: 378 EEATRAI 384
Score = 39.1 bits (87), Expect = 0.002
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 25/147 (17%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 386
++V LS +D+EL FG +G S + D G+S+GF F+ F+ + ++ V A
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 387 GEHTINNKKVDPKKA-----------------------KARHGKIFVGGLSSEISDDEIR 497
T ++K+ KA K++ ++V L ++DD++R
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 498 NFFSEFGTILEVEMPFDKTKNQR-KGF 575
F+ FGTI ++ D + R GF
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVSRGSGF 371
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 55.6 bits (128), Expect = 2e-08
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
KLF+GG+++ + LR+ F YGE+ V D TGRSRGF F+ F + E+ + A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Score = 39.9 bits (89), Expect = 0.001
Identities = 12/46 (26%), Positives = 30/46 (65%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+F+GG++ + +D +R F+++G +++ + D+ + +GF F+
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFV 86
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 55.6 bits (128), Expect = 2e-08
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 389
L+ G L + T+ L D F + S+ V D N RS G+A+I F P + M A
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109
Query: 390 EHT--------INNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 545
+T I DP + G IF+ L + I + + FS FGTIL ++
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAM 169
Query: 546 DKTKNQRKGFCFI 584
D T + KG+ F+
Sbjct: 170 DVT-GRSKGYGFV 181
Score = 52.0 bits (119), Expect = 3e-07
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES----IDKV 377
+F+ L +K L + F ++G I S V D TGRS+G+ F+ F+ ES IDK+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 378 --MAAGE------HTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 527
M + H I ++ D R ++V L EI +DE+R F +FG I
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVIS 256
Query: 528 EVEMPFDKTKNQR 566
+ D++ N R
Sbjct: 257 SAVVMRDQSGNSR 269
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 362
L++ L D++L++ F YG + S V +P G SRGF F+ + PE
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 55.2 bits (127), Expect = 3e-08
Identities = 28/75 (37%), Positives = 40/75 (53%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
K++VGGL W T + L + F +GEI +NV D T RS+G+ F+ FK ES +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 387 GEHTINNKKVDPKKA 431
TI + + K A
Sbjct: 74 PNPTIEGRITNCKLA 88
Score = 37.1 bits (82), Expect = 0.009
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
KI+VGGL + + NFF FG I+ V + D+ ++ +G+ F+
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFV 59
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 55.2 bits (127), Expect = 3e-08
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 17/160 (10%)
Frame = +3
Query: 156 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 335
D +D A+ P RD R +F + + T++++ + F G++ + + D N+ RS+G
Sbjct: 154 DKKDEPEAD-PERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 211
Query: 336 AFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG-----------------KIFVGG 464
+I F S+ +A + V K ++A K++VG
Sbjct: 212 GYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGN 271
Query: 465 LSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
L +S+ ++R F FG + V++P D Q KGF FI
Sbjct: 272 LHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFI 311
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +3
Query: 201 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
DRKL+VG L + ++ +LR F A+G +E + + DP TG+ +GF FI F
Sbjct: 264 DRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 55.2 bits (127), Expect = 3e-08
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
++FVGGLS E TD++L F +G+I + + +TGRSRGF FI F ++D+ +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 387 ------GEHTINNKKVDPK 425
G+ I+ + +PK
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
Score = 46.4 bits (105), Expect = 1e-05
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = +3
Query: 435 ARHG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
A+ G +IFVGGLS E++D ++ FS FG IL+ ++ ++ + +GF FI
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFI 53
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 55.2 bits (127), Expect = 3e-08
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
K+FVGGL+W+T + + DHF YG+I + +D T RS+G+ F+ FK ++ +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 387 GEHTINNKKVD 419
IN ++ +
Sbjct: 78 STPIINGRRAN 88
Score = 36.3 bits (80), Expect = 0.015
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVGGL+ + + + + F ++G ILE + DK + KG+ F+
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFV 63
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 55.2 bits (127), Expect = 3e-08
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 8/145 (5%)
Frame = +3
Query: 174 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 353
+AEA + L+VG L + L D F + ++ V D T RS G+A++ F
Sbjct: 35 AAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFA 93
Query: 354 APESIDKVMAAGEHT-INNKKV-------DPKKAKARHGKIFVGGLSSEISDDEIRNFFS 509
PE + M + + I ++ + DP + G +F+ L + I + + FS
Sbjct: 94 NPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFS 153
Query: 510 EFGTILEVEMPFDKTKNQRKGFCFI 584
FGTIL ++ D + KG+ F+
Sbjct: 154 SFGTILSCKVAMD-VVGRSKGYGFV 177
Score = 52.0 bits (119), Expect = 3e-07
Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 24/165 (14%)
Frame = +3
Query: 162 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 341
QD +E+ ++V L E TD EL+ FG YG+I S V D +G SR F F
Sbjct: 211 QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGF 269
Query: 342 IVFKAPE----SIDKV--MAAGEHTI----NNKKVDPKK--------------AKARHGK 449
+ F +PE +++K+ ++ GE + KK D ++ K +
Sbjct: 270 VNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN 329
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+++ L ++D++++ FSE+G + ++ + ++ +GF F+
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFV 373
Score = 37.1 bits (82), Expect = 0.009
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 362
L++ L D++L++ F YG + S V + + G SRGF F+ + PE
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPE 379
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 54.8 bits (126), Expect = 4e-08
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
+LFV GLS TT+++L+D F ++G++ V TD ++GRS+GF F+ + E +K A
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
Score = 35.9 bits (79), Expect = 0.020
Identities = 13/46 (28%), Positives = 30/46 (65%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
++FV GLS +++++++ F+ FG +++ + D+ + KGF F+
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFV 80
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 54.8 bits (126), Expect = 4e-08
Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Frame = +3
Query: 174 SAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 347
S AP R+ +FV L T+ L+D F +G I S V T + G+SRG+ F+
Sbjct: 100 SVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQ 158
Query: 348 FK-------APESIDKVMAAGEHTINNK---KVDPKKAKARHGKIFVGGLSSEISDDEIR 497
F+ A ++++ + A + K K D K + ++ +++ L +++S+D +R
Sbjct: 159 FEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLR 218
Query: 498 NFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
F+EFG I+ + + D+ + R G+ F+
Sbjct: 219 EKFAEFGKIVSLAIAKDENRLCR-GYAFV 246
Score = 43.6 bits (98), Expect = 1e-04
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 24/149 (16%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI------- 368
L++ L + ++ LR+ F +G+I S+ + D N RG+AF+ F PE
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETV 261
Query: 369 ------DKVMAAG--------EHTINNK---KVDPKKAKARHGKIFVGGLSSEISDDEIR 497
K + G E + + K + +K A+ I+V ++ ++++E+R
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 498 NFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
FS+ GTI ++ D+ K + KGF F+
Sbjct: 322 KHFSQCGTITSTKLMCDE-KGKSKGFGFV 349
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKV 377
++V ++ T++ELR HF G I S + D G+S+GF F+ F P E+ID V
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAV 361
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/131 (21%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 389
L+VG L T+ L D F + + S+ + D ++GRS + + F + + + +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 390 EHTINNKKV--------DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM-P 542
+++ N K+ P + G +FV L +++ +++ F +FG I+ ++
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT 145
Query: 543 FDKTKNQRKGF 575
+ K++ GF
Sbjct: 146 LEDGKSRGYGF 156
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 54.8 bits (126), Expect = 4e-08
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +3
Query: 195 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 368
D++ + FVGGL+W T ++ + F +GE+ + D TGRS+GF F+ FK +S+
Sbjct: 41 DNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
Score = 36.7 bits (81), Expect = 0.011
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+ FVGGL+ + I F+EFG + + ++ D+ + KGF F+
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFV 90
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 54.4 bits (125), Expect = 5e-08
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 13/134 (9%)
Frame = +3
Query: 177 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 353
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 354 APESIDKVMAAGEHTINNKKV-----DPKKAKARHG-------KIFVGGLSSEISDDEIR 497
E DKV+ ++ +NKK P + K G K+FVG L +S+ E++
Sbjct: 62 TREDADKVI----NSFHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQ 117
Query: 498 NFFSEFGTILEVEM 539
+ FSE+GTI ++++
Sbjct: 118 SLFSEYGTIKDLQI 131
Score = 34.7 bits (76), Expect = 0.046
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 389
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI--- 388
Query: 390 EHTINNKKVDPKKAKAR 440
+T+N ++ KK K +
Sbjct: 389 -NTMNGCQLSGKKLKVQ 404
Score = 33.9 bits (74), Expect = 0.080
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVG + +++ ++ F EF + EV + +KT +G CF+
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFL 58
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 54.0 bits (124), Expect = 7e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 353
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/46 (30%), Positives = 31/46 (67%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFV 52
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 54.0 bits (124), Expect = 7e-08
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +3
Query: 195 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 374
D K++ G L W T + L+D FG + V + NTGRSRGF FI F++ E++
Sbjct: 216 DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQS 275
Query: 375 VMA 383
+A
Sbjct: 276 ALA 278
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/75 (28%), Positives = 42/75 (56%)
Frame = +3
Query: 360 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 539
E +++ GE + +K +A G+++VG L I+ E+ F E GT+++V++
Sbjct: 89 EEVEEEGDEGEEEVEEEK-QTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQI 147
Query: 540 PFDKTKNQRKGFCFI 584
+DK ++ +GF F+
Sbjct: 148 VYDKVTDRSRGFGFV 162
Score = 48.4 bits (110), Expect = 3e-06
Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Frame = +3
Query: 87 NDNFAQDITTDNQLNGNAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDH 263
+D + + ++ + G + ++ + +A G ++ +L+VG L + T EL
Sbjct: 78 DDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASG--EEGRLYVGNLPYTITSSELSQI 135
Query: 264 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 443
FG G + + + D T RSRGF F+ + E + M N+ ++ + K
Sbjct: 136 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAM----QMFNSSQIGGRTVKVNF 191
Query: 444 GKIFVGGLSSEISDDEIRN 500
++ GG +E+ +IR+
Sbjct: 192 PEVPRGG-ENEVMRTKIRD 209
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 54.0 bits (124), Expect = 7e-08
Identities = 25/77 (32%), Positives = 43/77 (55%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
K+FVG L+W TT +LR +F +G++ NV ++ GRS+G+ FI F+ S + +
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 387 GEHTINNKKVDPKKAKA 437
+ I+ + + A A
Sbjct: 73 SKPIIDGRTTNCNLASA 89
Score = 37.9 bits (84), Expect = 0.005
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
KIFVG L+ + D++R +F +FG +++ + + + KG+ FI
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFI 58
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 54.0 bits (124), Expect = 7e-08
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 8/159 (5%)
Frame = +3
Query: 132 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 311
G GGGD H + + L+VG L + TD +L D+F ++ S+ V D
Sbjct: 30 GIGVGGGGDGVTHGALCS--------LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDA 81
Query: 312 NTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------DPKKAKARHGKIFVGGL 467
T S G+ ++ + + +K M ++ N K+ D ++ G +FV L
Sbjct: 82 ATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNL 141
Query: 468 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+ + + FS GTI+ ++ D Q +G+ F+
Sbjct: 142 DKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFV 179
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/73 (41%), Positives = 40/73 (54%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 389
++V LS TTD EL+ FG YG I S V D G+SR F F+ F+ PE + + A
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEA- 284
Query: 390 EHTINNKKVDPKK 428
+N KK D K+
Sbjct: 285 ---LNGKKFDDKE 294
Score = 45.2 bits (102), Expect = 3e-05
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +3
Query: 165 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 344
+ S++ + D L+V L TD++LR+ F +G I S V DP +G S+G F+
Sbjct: 315 EQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFV 373
Query: 345 VFKAPESIDKVM 380
F A +V+
Sbjct: 374 AFSAASEASRVL 385
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 54.0 bits (124), Expect = 7e-08
Identities = 27/82 (32%), Positives = 46/82 (56%)
Frame = +3
Query: 171 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 38 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 93
Query: 351 KAPESIDKVMAAGEHTINNKKV 416
K+ ++ + + +H++ +V
Sbjct: 94 KSVGDANRCIRSLDHSVLQGRV 115
Score = 32.3 bits (70), Expect = 0.24
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
++V GLS +++ ++ + F++ G + +V + D + +GF FI
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFI 91
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Frame = +3
Query: 132 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 293
G+ +GGG S S G +L+VG LSW D L + F G++
Sbjct: 219 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 278
Query: 294 NVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 440
V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 279 RVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 328
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/92 (28%), Positives = 40/92 (43%)
Frame = +3
Query: 96 FAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 275
F +++ + ++ D D E D KLFVG LS+ +L F +
Sbjct: 63 FVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 276 GEIESINVKTDPNTGRSRGFAFIVFKAPESID 371
G +E + V D TGRSRGF F+ ++
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+++VG LS + D + N F+E G ++E + +D+ + KGF F+
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFV 295
Score = 36.7 bits (81), Expect = 0.011
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVG LS + ++ F G + VE+ +DK + +GF F+
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Frame = +3
Query: 132 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 293
G+ +GGG S S G +L+VG LSW D L + F G++
Sbjct: 227 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 286
Query: 294 NVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 440
V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 287 RVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/92 (28%), Positives = 40/92 (43%)
Frame = +3
Query: 96 FAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 275
F +++ + ++ D D E D KLFVG LS+ +L F +
Sbjct: 63 FVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 276 GEIESINVKTDPNTGRSRGFAFIVFKAPESID 371
G +E + V D TGRSRGF F+ ++
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+++VG LS + D + N F+E G ++E + +D+ + KGF F+
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFV 303
Score = 36.7 bits (81), Expect = 0.011
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVG LS + ++ F G + VE+ +DK + +GF F+
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 145
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = +3
Query: 195 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 374
+ K++VG L W T LR+HF +G I S V D TGR+R FAF+ F + E D
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 375 VMA 383
++
Sbjct: 269 ALS 271
Score = 45.2 bits (102), Expect = 3e-05
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 25/137 (18%)
Frame = +3
Query: 249 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEH---- 395
+L D F +G + S+ V +P TG SRG ++ A S+D G
Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 182
Query: 396 --------TINNKKV---DPKKA---KARHGKIFVGGLSSEISDDEIRNFFSEFGTILEV 533
T N +V PKK +++H K++VG L D +RN FS+FGTI+
Sbjct: 183 YSVDMNPGTRRNPEVLNSTPKKILMYESQH-KVYVGNLPWFTQPDGLRNHFSKFGTIVST 241
Query: 534 EMPFDKTKNQRKGFCFI 584
+ D+ + + F F+
Sbjct: 242 RVLHDRKTGRNRVFAFL 258
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 52.4 bits (120), Expect = 2e-07
Identities = 25/70 (35%), Positives = 44/70 (62%)
Frame = +3
Query: 156 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 335
DS+D + +E+P +KLF+ GLS+ T++K LR F +GE+ + + D + RS+G+
Sbjct: 267 DSRDQDDSESPPVKT-KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 325
Query: 336 AFIVFKAPES 365
AF+ + E+
Sbjct: 326 AFLEYTTEEA 335
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/75 (28%), Positives = 38/75 (50%)
Frame = +3
Query: 360 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 539
ES++K + + D + + K+F+ GLS S+ +R F FG ++EV++
Sbjct: 254 ESLNKDYEGDSTQDSRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKI 313
Query: 540 PFDKTKNQRKGFCFI 584
DK + KG+ F+
Sbjct: 314 IMDKISKRSKGYAFL 328
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +3
Query: 123 QLNGNAENGGGDSQDHN---SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 293
++ AE G SQD + SA D R ++VG + + T +E++ HF + G + +
Sbjct: 73 EMQAKAEKDMGASQDPSGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRV 132
Query: 294 NVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 416
+ TD G+ +GFA++ F E++ + E ++ +++
Sbjct: 133 TILTD-KFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQI 172
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 423 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+K + I+VG + + +E++ F GT+ V + DK Q KGF ++
Sbjct: 96 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYV 148
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 51.2 bits (117), Expect = 5e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Frame = +3
Query: 171 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
+S G + ++FVGGL + T+ ++R+ ++G + N+ D TG S+G+AF V+
Sbjct: 364 SSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVY 423
Query: 351 KAPESIDKVMAA 386
+ P D AA
Sbjct: 424 QDPSVTDIACAA 435
Score = 31.5 bits (68), Expect = 0.43
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 581
+IFVGGL ++ +IR FG + + D+ KG+ F
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAF 420
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 51.2 bits (117), Expect = 5e-07
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 28/148 (18%)
Frame = +3
Query: 192 RDD--DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPE 362
RDD D +FVG L+ + TD L + F A Y ++ V D TGR++G+ F+ F
Sbjct: 149 RDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Query: 363 SIDKVM-----------------AAGEHTINNKKVDPKKAKA--------RHGKIFVGGL 467
+ M AA + + ++ + + A + +FVGGL
Sbjct: 209 EQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGL 268
Query: 468 SSEISDDEIRNFFSEFGTILEVEMPFDK 551
+ ++DD ++N FS++G I+ V++P K
Sbjct: 269 DASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Score = 37.9 bits (84), Expect = 0.005
Identities = 32/151 (21%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Frame = +3
Query: 174 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 353
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 354 APESIDKVMAAGEHT-----------IN--NKKVDPKKAKARHGKIFVGGLSSEISD-DE 491
+ + ++V+ + +N + K+ + IFVG L+++++D
Sbjct: 112 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYIL 171
Query: 492 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+ F + + ++ ++ D+ + KG+ F+
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFV 202
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 147 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 320
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 51.2 bits (117), Expect = 5e-07
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 28/148 (18%)
Frame = +3
Query: 192 RDD--DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPE 362
RDD D +FVG L+ + TD L + F A Y ++ V D TGR++G+ F+ F
Sbjct: 149 RDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Query: 363 SIDKVM-----------------AAGEHTINNKKVDPKKAKA--------RHGKIFVGGL 467
+ M AA + + ++ + + A + +FVGGL
Sbjct: 209 EQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGL 268
Query: 468 SSEISDDEIRNFFSEFGTILEVEMPFDK 551
+ ++DD ++N FS++G I+ V++P K
Sbjct: 269 DASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Score = 37.9 bits (84), Expect = 0.005
Identities = 32/151 (21%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Frame = +3
Query: 174 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 353
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 354 APESIDKVMAAGEHT-----------IN--NKKVDPKKAKARHGKIFVGGLSSEISD-DE 491
+ + ++V+ + +N + K+ + IFVG L+++++D
Sbjct: 112 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYIL 171
Query: 492 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+ F + + ++ ++ D+ + KG+ F+
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFV 202
Score = 33.1 bits (72), Expect = 0.14
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 147 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 320
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 50.8 bits (116), Expect = 7e-07
Identities = 30/146 (20%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Frame = +3
Query: 156 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 335
+ + H+ + + ++FVG L ++++L+ FG GE+ + + +P T +S+G
Sbjct: 198 EEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGS 257
Query: 336 AFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEF 515
AF+ F E + + + + N K A + +FVG + + + +R +
Sbjct: 258 AFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHY 317
Query: 516 G--TILEVEMPFDKTK-NQRKGFCFI 584
G + ++ + D N +G+ F+
Sbjct: 318 GVENMDDITLVEDSNNVNMNRGYAFL 343
Score = 36.7 bits (81), Expect = 0.011
Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Frame = +3
Query: 198 DDRKLFVGGLSWETTDKELRDHFGAYG--EIESINVKTDPNT-GRSRGFAFIVFKA-PES 365
D+ LFVG + T + LR+ YG ++ I + D N +RG+AF+ F + ++
Sbjct: 292 DNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDA 351
Query: 366 ID--------KVMAAGEHTINNKKVD-----PKKAKARHGKIFVGGLSSEISDDEIRNFF 506
+D VM E D + A+ IF+ GL +++ +R+
Sbjct: 352 MDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLL 411
Query: 507 SEFGTILEVEMPFDKTKNQRKGFCFI 584
+G + +VE+ + +RK F F+
Sbjct: 412 KPYGKLEKVELARNMPSARRKDFGFV 437
Score = 33.5 bits (73), Expect = 0.11
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
+ +F+ GL ++ +RD YG++E + + + + R + F F+ F E+ V
Sbjct: 391 KTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEA--AVSC 448
Query: 384 AGEHTINNKKVDPKKAKAR 440
A INN ++ + KA+
Sbjct: 449 A--KFINNSELGEGEDKAK 465
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 50.4 bits (115), Expect = 9e-07
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 20/147 (13%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
+ LF G LS++ ++ + F GE+ + + + + G +G+ I F +PE K +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDD-GSFKGYGHIEFASPEEAQKALE 442
Query: 384 AGEHTI---------NNKKVDPKKAK-ARHGK------IFVGGLSSEISDDEI----RNF 503
+ N++ P+ + R G+ I+V G SS + +DEI R+
Sbjct: 443 MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSH 502
Query: 504 FSEFGTILEVEMPFDKTKNQRKGFCFI 584
FS+ G + V +P D+ +GF +I
Sbjct: 503 FSKCGEVTRVHVPTDRETGASRGFAYI 529
Score = 46.4 bits (105), Expect = 1e-05
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +3
Query: 144 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTD----KELRDHFGAYGEIESINVKTDP 311
N G ++ N R ++V G S + KELR HF GE+ ++V TD
Sbjct: 459 NERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDR 518
Query: 312 NTGRSRGFAFI 344
TG SRGFA+I
Sbjct: 519 ETGASRGFAYI 529
Score = 34.3 bits (75), Expect = 0.061
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 351 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 530
K ++ V A + K + + +F G LS +I+ +I NFF E G +++
Sbjct: 353 KKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVD 412
Query: 531 VEM 539
V +
Sbjct: 413 VRL 415
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +3
Query: 195 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 374
+ + KLFVG LSW T + L F G++ V D +TGRSRG+ F+ + + ++
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 375 VM 380
+
Sbjct: 234 AL 235
Score = 46.0 bits (104), Expect = 2e-05
Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 12/138 (8%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE-------S 365
KL+ G L + L + E + V + +TG+SRGFAF+ E +
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 366 IDKVMAAGEHTINNKKVDPKKAK-----ARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 530
+D G N PK K K+FVG LS ++ + + F E G ++
Sbjct: 146 LDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVG 205
Query: 531 VEMPFDKTKNQRKGFCFI 584
+ FD + +G+ F+
Sbjct: 206 ARVVFDGDTGRSRGYGFV 223
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 50.0 bits (114), Expect = 1e-06
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +3
Query: 153 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 320
G N A A G+ +D +FVG LS E TD L D F A+ V D TG
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTG 186
Query: 321 RSRGFAFIVFK 353
RSRGF F+ F+
Sbjct: 187 RSRGFGFVSFR 197
Score = 44.4 bits (100), Expect = 6e-05
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Frame = +3
Query: 186 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIESIN-VKTDPNTGRSRGFAFIVFKA 356
PG D R ++ G + + T+ L++ F + G IES ++ D + S GF +
Sbjct: 55 PGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKS---SYGFVHYFDRR 111
Query: 357 PESIDKVMAAGEHTINNK-KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEF 515
S+ + G H KV+ ++ + H IFVG LS E++D + + FS F
Sbjct: 112 CASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAF 171
Query: 516 GTILEVEMPFDKTKNQRKGFCFI 584
+ + + +D+ + +GF F+
Sbjct: 172 NSCSDARVMWDQKTGRSRGFGFV 194
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/60 (36%), Positives = 37/60 (61%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
KL++GGLS T + L+D F ++ + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/46 (26%), Positives = 26/46 (56%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+++GGLS + +++ FS F + E + +K + +G+ F+
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFV 77
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
K+FVGGLS T + L++ FG++G+I V D +G SRGF F+ + + E + M A
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 387 GEHTINNKKVD 419
+ NK++D
Sbjct: 97 ----MQNKELD 103
Score = 36.3 bits (80), Expect = 0.015
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
KIFVGGLS + ++ F FG I++ + D+ +GF F+
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFV 82
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMA 383
KLF+GGLS+ TT++ L + F G++ + D + RS+GF F+ F + + K +M
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 384 AGEHTINNKKVDPKKAKAR 440
+N + + AKA+
Sbjct: 95 FNGQQLNGRTIFVDYAKAK 113
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+F+GGLS ++ + FS+ G ++E ++ D+ ++ KGF F+
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFV 80
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 49.2 bits (112), Expect = 2e-06
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 11/136 (8%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 389
L+VG LS + T+K+L D F + S+++ + TG+S +A+I F +P S M
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 390 EHT-INNKKVD----------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 536
H+ + K + ++ + ++V L S I+ + F FG+IL +
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCK 142
Query: 537 MPFDKTKNQRKGFCFI 584
+ + Q KGF F+
Sbjct: 143 VV--EENGQSKGFGFV 156
Score = 46.4 bits (105), Expect = 1e-05
Identities = 28/74 (37%), Positives = 37/74 (50%)
Frame = +3
Query: 159 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 338
++D +A A G D ++V L TD L F YG + S+ V D GRSRGF
Sbjct: 188 NKDERAAMA-GNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFG 245
Query: 339 FIVFKAPESIDKVM 380
F+ F PE+ K M
Sbjct: 246 FVNFCNPENAKKAM 259
Score = 41.1 bits (92), Expect = 5e-04
Identities = 21/47 (44%), Positives = 27/47 (57%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
L+V LS + LR+ FG YG+I S V N GRS+GF F+ F
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHEN-GRSKGFGFVCF 351
Score = 38.7 bits (86), Expect = 0.003
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 12/137 (8%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA- 386
L+V L T L F +G I S V + G+S+GF F+ F +S +A
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 387 ------GEHTINNKKVDPKKAKARHGK-----IFVGGLSSEISDDEIRNFFSEFGTILEV 533
G+ K ++ + A G ++V L ++DD + FS++GT+ V
Sbjct: 172 HGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSV 231
Query: 534 EMPFDKTKNQRKGFCFI 584
+ D R GF F+
Sbjct: 232 VVMRDGMGRSR-GFGFV 247
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 49.2 bits (112), Expect = 2e-06
Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 23/164 (14%)
Frame = +3
Query: 162 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 341
+D EA D R +F ++ T++++ + F G++ + + D + RSRG +
Sbjct: 168 EDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGY 227
Query: 342 IVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG-----------------------KI 452
+ F S+ +A + + V K ++A ++
Sbjct: 228 VEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRL 287
Query: 453 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+VG L +S+D++R F FG++ V++P D+T KGF F+
Sbjct: 288 YVGNLHINMSEDDLRKVFESFGSVELVQVPRDET-GLCKGFGFV 330
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 365
++VGG+ ++ T+ +L F YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/45 (31%), Positives = 30/45 (66%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
++VGG+ ++++ ++ FS++G I++V + DK + KGF F+
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFL 82
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/85 (27%), Positives = 42/85 (49%)
Frame = +3
Query: 330 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFS 509
G I + I V+ + + ++ P + K++V GLS ++D +R+ F
Sbjct: 39 GTGVISARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFE 98
Query: 510 EFGTILEVEMPFDKTKNQRKGFCFI 584
+FG ++ + M DK N+ KGF F+
Sbjct: 99 QFGNLIHMNMVMDKVANRPKGFAFL 123
Score = 48.4 bits (110), Expect = 3e-06
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
KL+V GLS+ TT+ LRD F +G + +N+ D R +GFAF+ ++ E K +
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI-Q 136
Query: 387 GEH--TINNKKVDPKKAKAR 440
G H ++ + + ++AK R
Sbjct: 137 GMHGKFLDGRVIFVEEAKTR 156
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.4 bits (110), Expect = 3e-06
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +3
Query: 201 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 377
D +FVG L+ + TD L++ F Y + V TDP+TGRS+G+ F+ F ++
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 378 MA 383
MA
Sbjct: 175 MA 176
Score = 35.5 bits (78), Expect = 0.026
Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 17/147 (11%)
Frame = +3
Query: 195 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 374
++ R L++G L + + L F GE+ S+ V + TG+ G+ FI F + + ++
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 375 V--------MAAGEHTI--------NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFF 506
M E T + +KVD A H IFVG L+ +++D ++ F
Sbjct: 81 TLQTYNGTQMPGTELTFRLNWASFGSGQKVD---AGPDH-SIFVGDLAPDVTDYLLQETF 136
Query: 507 S-EFGTILEVEMPFDKTKNQRKGFCFI 584
+ ++ ++ D + + KG+ F+
Sbjct: 137 RVHYSSVRGAKVVTDPSTGRSKGYGFV 163
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 48.4 bits (110), Expect = 3e-06
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 8/153 (5%)
Frame = +3
Query: 150 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 329
G + +SAE R+ D ++VGGL + +++ L + F G + ++ V D T +
Sbjct: 10 GANLLGQHSAE---RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQ 66
Query: 330 GFAFIVFKAPESID---KVMAA----GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDD 488
+ FI +++ E D KV+ G+ NK KK+ +F+G L ++ +
Sbjct: 67 NYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEK 126
Query: 489 EIRNFFSEFGTIL-EVEMPFDKTKNQRKGFCFI 584
+ + FS FG I ++ D +GF FI
Sbjct: 127 LLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFI 159
Score = 47.2 bits (107), Expect = 8e-06
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +3
Query: 174 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI-NVKTDPNTGRSRGFAFIVF 350
S + D LF+G L + +K L D F A+G I S + DP+TG SRGF FI +
Sbjct: 102 SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISY 161
Query: 351 KAPESIDKVMAA--GEHTINNK 410
+ E+ D + + G++ N +
Sbjct: 162 DSFEASDAAIESMTGQYLSNRQ 183
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 48.0 bits (109), Expect = 5e-06
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 25/154 (16%)
Frame = +3
Query: 165 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAF 341
+ AE P + +FVG L+ + TD L + F A Y ++ V D TGRS+G+ F
Sbjct: 164 ERRQAEGP----EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGF 219
Query: 342 IVFKAPESIDKVMAA--GEHTIN---------NKK---VDPKKAKARHGK---------- 449
+ F + M G++ + NKK + P + G
Sbjct: 220 VRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTT 279
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 551
IFVG + +++D++++ F +FG ++ V++P K
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGK 313
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 320
+FVG + T+ +L+ FG +GE+ + + G
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCG 316
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 386
+++VG LS TTD LR+ F YG + V D T RSRGF F+ + + + ++
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 387 GE-HTINNKKVDPK 425
+ +N ++V K
Sbjct: 64 MDGKELNGRRVSVK 77
Score = 36.7 bits (81), Expect = 0.011
Identities = 14/46 (30%), Positives = 29/46 (63%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+++VG LS +DD +R FS +G +++ + D+ ++ +GF F+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFV 49
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 47.6 bits (108), Expect = 6e-06
Identities = 25/66 (37%), Positives = 34/66 (51%)
Frame = +3
Query: 186 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 365
P + LFV GLS TT + LR F +GE+ V TD +G S+GF F+ + E
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLED 109
Query: 366 IDKVMA 383
K +A
Sbjct: 110 SAKGIA 115
Score = 37.1 bits (82), Expect = 0.009
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+FV GLS + + +R F++FG + + ++ D+ KGF F+
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFV 102
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 47.6 bits (108), Expect = 6e-06
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Frame = +3
Query: 123 QLNGNAENGGGDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIES 290
++ E G +QD S A G++ D R ++VG + + T +E++ HF G +
Sbjct: 58 EMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNR 117
Query: 291 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK--KVDPKK 428
+ + D G+ +GFA++ F E++ + + E ++ + KV PK+
Sbjct: 118 VTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKR 164
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = +3
Query: 366 IDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 545
++K M A + + K + ++VG + + +E++ F GT+ V +
Sbjct: 63 VEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILM 122
Query: 546 DKTKNQRKGFCFI 584
DK Q KGF ++
Sbjct: 123 DKF-GQPKGFAYV 134
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 47.6 bits (108), Expect = 6e-06
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Frame = +3
Query: 123 QLNGNAENGGGDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIES 290
++ E G +QD S A G++ D R ++VG + + T +E++ HF G +
Sbjct: 58 EMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNR 117
Query: 291 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK--KVDPKK 428
+ + D G+ +GFA++ F E++ + + E ++ + KV PK+
Sbjct: 118 VTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKR 164
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = +3
Query: 366 IDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 545
++K M A + + K + ++VG + + +E++ F GT+ V +
Sbjct: 63 VEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILM 122
Query: 546 DKTKNQRKGFCFI 584
DK Q KGF ++
Sbjct: 123 DKF-GQPKGFAYV 134
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 47.6 bits (108), Expect = 6e-06
Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 21/147 (14%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-- 380
KL+VGG+ +++T+ E+R +F + G I ++ K P G G AFI F + + +
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAF 221
Query: 381 ---AAGEH--TINN--KKVDPKKAKAR------------HGKIFVGGLSSEISDDEIRNF 503
A G+ TI K P + + + ++++G L+ + ++ +IR
Sbjct: 222 DRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKL 281
Query: 504 FSEFGTILEVEMPFDKTKNQRKGFCFI 584
FS+ I V + +K + KG+ +
Sbjct: 282 FSDC-VINSVRLGKNKETGEFKGYAHV 307
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = +3
Query: 195 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 374
D ++++G L+W+TT++++R F I S+ + + TG +G+A + FK S+
Sbjct: 259 DGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAI 317
Query: 375 VMAAGEHTINNKKV 416
+ + I + V
Sbjct: 318 ALKLDQQVICGRPV 331
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 47.2 bits (107), Expect = 8e-06
Identities = 19/73 (26%), Positives = 41/73 (56%)
Frame = +3
Query: 198 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 377
D R +FVG + + T +E++ HF G + + + TD G+ +GFA++ F E++ +
Sbjct: 90 DARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD-KFGQPKGFAYVEFVEVEAVQEA 148
Query: 378 MAAGEHTINNKKV 416
+ E ++ +++
Sbjct: 149 LQLNESELHGRQL 161
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 366 IDKVMAAGEH-TINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 542
++K M A + +I + ++ AR +FVG + + +E++ F GT+ V +
Sbjct: 67 VEKEMGAQDPASIAANQAGKEEVDAR--SVFVGNVDYACTPEEVQQHFQTCGTVHRVTIL 124
Query: 543 FDKTKNQRKGFCFI 584
DK Q KGF ++
Sbjct: 125 TDKF-GQPKGFAYV 137
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 47.2 bits (107), Expect = 8e-06
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +3
Query: 153 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 332
G S+ + + + L+V GLS TDK+L HF G++ S + +P T SRG
Sbjct: 55 GRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRG 114
Query: 333 FAFIVFKAPESIDK 374
FAF+ + + ++
Sbjct: 115 FAFVTMSSLKDAER 128
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/45 (22%), Positives = 24/45 (53%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
++V GLS+ ++D ++ F++ G + + + +GF F+
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFV 118
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 47.2 bits (107), Expect = 8e-06
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 22/143 (15%)
Frame = +3
Query: 177 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 353
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 354 APESIDKVMAAGEHTINNKKV-----DPKKAKARHG----------------KIFVGGLS 470
E DKV+ ++ +NKK P + K G K+FVG L
Sbjct: 62 TREDADKVI----NSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLP 117
Query: 471 SEISDDEIRNFFSEFGTILEVEM 539
+S+ E+++ FSE+GTI ++++
Sbjct: 118 KNVSETEVQSLFSEYGTIKDLQI 140
Score = 34.7 bits (76), Expect = 0.046
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 389
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI--- 397
Query: 390 EHTINNKKVDPKKAKAR 440
+T+N ++ KK K +
Sbjct: 398 -NTMNGCQLSGKKLKVQ 413
Score = 33.9 bits (74), Expect = 0.080
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
K+FVG + +++ ++ F EF + EV + +KT +G CF+
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFL 58
Score = 32.3 bits (70), Expect = 0.24
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +3
Query: 201 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 380
+ KLFVG L ++ E++ F YG I+ + + + S+G F+ +++ E M
Sbjct: 108 EHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAM 166
Query: 381 AA--GEHTINNKKV 416
A G H + V
Sbjct: 167 EALNGRHIMEGANV 180
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Frame = +3
Query: 102 QDITTDNQLNGNAENGG-GDSQDHNSAEA-PGRD----DDRKLFVGGLSWETTDKELRDH 263
Q T N AENG DS + +A P + D+ F+ LS + ++++R
Sbjct: 611 QSATVPATKNVKAENGKTADSDKEETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKF 670
Query: 264 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 443
FG G ++SI + +TG+ RG A+ F E + +A KK+ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 444 GK 449
GK
Sbjct: 731 GK 732
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Frame = +3
Query: 102 QDITTDNQLNGNAENGG-GDSQDHNSAEA-PGRD----DDRKLFVGGLSWETTDKELRDH 263
Q T N AENG DS + +A P + D+ F+ LS + ++++R
Sbjct: 611 QSATVPATKNVKAENGKTADSDKEETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKF 670
Query: 264 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 443
FG G ++SI + +TG+ RG A+ F E + +A KK+ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 444 GK 449
GK
Sbjct: 731 GK 732
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/99 (29%), Positives = 50/99 (50%)
Frame = +3
Query: 153 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 332
G + + + E+P R L+VGGL+ ++++RD F A+GEIESI + + +
Sbjct: 211 GKAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAE------KA 264
Query: 333 FAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 449
AF+ + E +K A E N V+ ++ K G+
Sbjct: 265 CAFVTYTTREGAEK---AAEELSNRLVVNGQRLKLTWGR 300
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/99 (27%), Positives = 52/99 (52%)
Frame = +3
Query: 153 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 332
G + + + E+P + + L+VGGL+ ++++RD F A+GEIESI + D +
Sbjct: 211 GKAGEMGTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KA 264
Query: 333 FAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 449
AF+ + + E +K A + N ++ ++ K G+
Sbjct: 265 CAFVTYTSREGAEK---AAQELSNRLVINGQRLKLTWGR 300
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 46.4 bits (105), Expect = 1e-05
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 24/149 (16%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 386
++V L+ TTD +L++ FG YG+I S V D G+S+GF F+ F+ A ++ V +
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESL 89
Query: 387 GEHTINNK---------------------KVDPKKA--KARHGKIFVGGLSSEISDDEIR 497
H ++K + + K+A K + ++V L ISD++++
Sbjct: 90 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 149
Query: 498 NFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
FS FGT+ ++ D KG F+
Sbjct: 150 EIFSPFGTVTSSKVMRD-PNGTSKGSGFV 177
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +3
Query: 165 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 344
+ N EA + L+V L +D++L++ F +G + S V DPN G S+G F+
Sbjct: 119 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFV 177
Query: 345 VFKAPESIDKVMA 383
F PE + M+
Sbjct: 178 AFATPEEATEAMS 190
Score = 34.3 bits (75), Expect = 0.061
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = +3
Query: 369 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 548
DK + G + ++ D K + ++V L+ +DD+++N F E+G I + D
Sbjct: 5 DKQVYVGPF-LRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD 63
Query: 549 KTKNQRKGFCFI 584
+ + KGF F+
Sbjct: 64 -GEGKSKGFGFV 74
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 46.4 bits (105), Expect = 1e-05
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 195 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID- 371
D K++VG L+ T + L + F G++ S V P T +S GF F+ F + E ++
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 372 KVMAAGEHTINNKKVDPKKA 431
++A + +K+ KA
Sbjct: 234 AIVALNNSLLEGQKIRVNKA 253
Score = 45.6 bits (103), Expect = 2e-05
Identities = 33/164 (20%), Positives = 75/164 (45%), Gaps = 21/164 (12%)
Frame = +3
Query: 156 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 335
++++ +A P + R++++G + T+++L +G +E + V D +GRSR F
Sbjct: 60 ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119
Query: 336 AFIVFKAPESIDKVM-AAGEHTINNKKV-------------DPKKAKARHG-------KI 452
F K+ E + V+ +T+ +++ D ++ K+
Sbjct: 120 GFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKV 179
Query: 453 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+VG L+ ++ + + N FSE G ++ ++ ++ GF F+
Sbjct: 180 YVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFV 223
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 46.4 bits (105), Expect = 1e-05
Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 28/161 (17%)
Frame = +3
Query: 186 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 365
P + LF LS+ ++ + F GE+ + T+ + G RGF + F + E
Sbjct: 291 PAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEE 350
Query: 366 IDKVMAAGEHTINNKKV-----------------DPKKAKARHG-------KIFVGGLSS 473
K + + +++ P+ R G KIFV G +
Sbjct: 351 AQKALEFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDA 410
Query: 474 EISDDEIRN----FFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+S+D+I+N FS G I V +P D+ KG ++
Sbjct: 411 SLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYL 451
Score = 46.4 bits (105), Expect = 1e-05
Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Frame = +3
Query: 198 DDRKLFVGG----LSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
D++K+FV G LS + LR+HF + GEI++++V D +TG S+G A++ F
Sbjct: 399 DEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
Score = 31.5 bits (68), Expect = 0.43
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 360 ESIDKVMAAGEHTINNKKVDPKKAKARHGK-IFVGGLSSEISDDEIRNFFSEFGTILEVE 536
+S D M E + + P A K +F LS I ++ NFF E G +++V
Sbjct: 268 KSSDVEMVDAEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVR 327
Query: 537 MPFDKTKNQRKGF 575
++ +GF
Sbjct: 328 FSTNRDDGSFRGF 340
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 46.0 bits (104), Expect = 2e-05
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Frame = +3
Query: 186 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----- 350
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 351 --KAPESID-KVMAAGEHTINNKKVDPKKAKARHGKI 452
KA E +D +V+ E T+ K P K G++
Sbjct: 70 AHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRV 106
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 46.0 bits (104), Expect = 2e-05
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Frame = +3
Query: 186 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----- 350
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 351 --KAPESID-KVMAAGEHTINNKKVDPKKAKARHGKI 452
KA E +D +V+ E T+ K P K G++
Sbjct: 70 AHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRV 106
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 374
L+V GLS TDK+L HF G++ S + +P T SRGFAF+ + + ++
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 127
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/45 (22%), Positives = 24/45 (53%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
++V GLS+ ++D ++ F++ G + + + +GF F+
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFV 117
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +3
Query: 171 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 338
N A A G+ +D +FVG LS E TD L F + V D TGRSRGF
Sbjct: 129 NWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFG 188
Query: 339 FIVFK 353
F+ F+
Sbjct: 189 FVSFR 193
Score = 45.2 bits (102), Expect = 3e-05
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Frame = +3
Query: 186 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIESIN-VKTDPNTGRSRGFAFIVFKA 356
PG D R ++VG + + T+ L++ F + G +ES ++ D + S GF +
Sbjct: 51 PGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKS---SYGFVHYFDRR 107
Query: 357 PESIDKVMAAGEHTINNK-KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEF 515
++ + G H KV+ ++ + H IFVG LS E++D + FS F
Sbjct: 108 SAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVF 167
Query: 516 GTILEVEMPFDKTKNQRKGFCFI 584
+ + + +D+ + +GF F+
Sbjct: 168 SSCSDARVMWDQKTGRSRGFGFV 190
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +3
Query: 180 EAPGRDD-DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK- 353
E DD +R LF+ L ++ T +E++ F +GE+ES+++ T R G AF+ FK
Sbjct: 552 ETQDNDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKT 611
Query: 354 APESIDKVMAA 386
A S+ + AA
Sbjct: 612 ADASVAAISAA 622
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +3
Query: 150 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 329
G + ++ E + V GL + T+ +L + F G + + T+ + R
Sbjct: 2 GKNKRERKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHR 61
Query: 330 GFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 440
GFAF+ F E +++ + T+ +++ K+A R
Sbjct: 62 GFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHR 99
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 408 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+K +K+ + V GL I++ ++ FSE G + + +K ++ +GF F+
Sbjct: 8 RKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFV 66
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
KL + L ++ +++ F A G + + + + TG +GFAF+ F
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 45.6 bits (103), Expect = 2e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 380
+LFV LS TTD+ LR F +G+I+ + D T R +GF FI F + + K +
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 429 AKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
AK ++FV LS+ +D +R FS FG I E + D + KGF FI
Sbjct: 2 AKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFI 53
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 45.6 bits (103), Expect = 2e-05
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 380
LFV G+S+ +T++ L F YG++ ++V D R +GFA++ F + E +K +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Score = 37.9 bits (84), Expect = 0.005
Identities = 14/45 (31%), Positives = 30/45 (66%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+FV G+S +++ + FS++G +L+V++ DK + + KGF ++
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYV 67
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 45.2 bits (102), Expect = 3e-05
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Frame = +3
Query: 198 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT--DPNTGRSRGFAFIVFKAPESID 371
+++ ++VG L + L F + E E ++VK + N G S G+ F+ F++ + D
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 372 KVMAAGEHTINNKKVDP-----------KKAKARHG---KIFVGGLSSEISDDEIRNFFS 509
KV+ T P +K +G IFVG LS ++SD+ + FS
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 510 E-FGTILEVEMPFDKTKNQRKGFCFI 584
E + ++ ++ D + KG+ F+
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFV 244
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 201 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 377
D +FVG LS + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 378 M 380
M
Sbjct: 256 M 256
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 45.2 bits (102), Expect = 3e-05
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 17/146 (11%)
Frame = +3
Query: 198 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT--DPNTGRSRGFAFIVFKAPESID 371
+++ ++VG L + L F + E E ++VK + N G S G+ F+ F++ + D
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 372 KVMAAGEHTINNKKVDP-----------KKAKARHG---KIFVGGLSSEISDDEIRNFFS 509
KV+ T P +K +G IFVG LS ++SD+ + FS
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 510 E-FGTILEVEMPFDKTKNQRKGFCFI 584
E + ++ ++ D + KG+ F+
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFV 244
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 27/144 (18%)
Frame = +3
Query: 201 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 377
D +FVG LS + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 378 MA---AGEHTINNKKVDPKKAKARHGKIFVGG-----------------------LSSEI 479
M + + ++ P + +G GG L S +
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSV 315
Query: 480 SDDEIRNFFSEFGTILEVEMPFDK 551
+D++++ F+EFG I+ V++P K
Sbjct: 316 TDEDLKQPFNEFGEIVSVKIPVGK 339
Score = 37.5 bits (83), Expect = 0.007
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = +3
Query: 114 TDNQLNGNAENGGGDSQDHNSAEAPGRDD-DRKLFVGGLSWETTDKELRDHFGAYGEIES 290
T + NG + GG + + P D + +FVGGL TD++L+ F +GEI S
Sbjct: 275 TPRKTNGYQQQGG--YMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVS 332
Query: 291 INVKTDPNTGRSRGFAFIVFK--APESIDKV 377
+ + G+ GF V + A E+++K+
Sbjct: 333 VKIP----VGKGCGFVQFVNRPNAEEALEKL 359
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 201 DRKLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVF 350
D +FVG L+ E TD L D F YG ++ V D TGRS+G+ F+ F
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRF 203
Score = 43.6 bits (98), Expect = 1e-04
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 16/160 (10%)
Frame = +3
Query: 153 GDSQDHNSAEAPGRDDDRK-LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 329
G Q ++ PG D K L++G L + + F GE S V + TG+S
Sbjct: 42 GQHQYGIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSE 101
Query: 330 GFAFIVFKAPESIDKV--------MAAGEHTINNKKVDPKKAKARHGK------IFVGGL 467
G+ FI F + ++V M + E T + R IFVG L
Sbjct: 102 GYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDL 161
Query: 468 SSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFI 584
+ E++D + + F +G++ ++ D+T + KG+ F+
Sbjct: 162 APEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFV 201
Score = 42.3 bits (95), Expect = 2e-04
Identities = 15/31 (48%), Positives = 25/31 (80%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMP 542
IFVGGL + ++DDE+++ F +FG +L V++P
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIP 292
Score = 37.5 bits (83), Expect = 0.007
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 162 QDHNSAEAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 338
Q+ A A D ++ +FVGGL TD EL+ FG +GE+ ++VK P G+ GF
Sbjct: 245 QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGEL--LHVKIPP--GKRCGFV 300
Query: 339 FIVFKA 356
KA
Sbjct: 301 QYANKA 306
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 44.8 bits (101), Expect = 4e-05
Identities = 20/61 (32%), Positives = 39/61 (63%)
Frame = +3
Query: 168 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 347
+N A G D + LFV L++E+++ +++ F +YG I+ +++ TD T + +G+AFI
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIE 185
Query: 348 F 350
+
Sbjct: 186 Y 186
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +3
Query: 417 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
DP + +FV L+ E S+ +I+ F +G I V + D+ N+ KG+ FI
Sbjct: 129 DPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFI 184
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 44.8 bits (101), Expect = 4e-05
Identities = 30/75 (40%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +3
Query: 153 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESI----NVKTD 308
G N A A G+ +D +FVG LS E TD L D F A+ S V D
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWD 186
Query: 309 PNTGRSRGFAFIVFK 353
TGRSRGF F+ F+
Sbjct: 187 QKTGRSRGFGFVSFR 201
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 44.4 bits (100), Expect = 6e-05
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +3
Query: 189 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 368
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 369 DKVMAA 386
D AA
Sbjct: 414 DIACAA 419
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 581
+IFVGGL ++ ++R FG + ++ D+ KG+ F
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 44.4 bits (100), Expect = 6e-05
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +3
Query: 189 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 368
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 369 DKVMAA 386
D AA
Sbjct: 414 DIACAA 419
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 581
+IFVGGL ++ ++R FG + ++ D+ KG+ F
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 44.4 bits (100), Expect = 6e-05
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +3
Query: 189 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 368
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 369 DKVMAA 386
D AA
Sbjct: 414 DIACAA 419
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 581
+IFVGGL ++ ++R FG + ++ D+ KG+ F
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 44.4 bits (100), Expect = 6e-05
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +3
Query: 213 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVM 380
FV GL +T +K+L D F +G + + D +TG+SR F F+ F+ +S+ D +M
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 44.4 bits (100), Expect = 6e-05
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +3
Query: 171 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 338
N A A G+ +D +FVG LS E TD L F Y V D TGRSRGF
Sbjct: 124 NWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFG 183
Query: 339 FIVFK 353
F+ F+
Sbjct: 184 FVSFR 188
Score = 43.6 bits (98), Expect = 1e-04
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Frame = +3
Query: 186 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 359
PG D R ++VG + + T+ L++ F G +ES + + S GF +
Sbjct: 46 PGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS--SYGFVHYFDRRS 103
Query: 360 ESIDKVMAAGEHTINNK-KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 518
+ + G H KV+ ++ + H IFVG LS E++D + FS +
Sbjct: 104 AGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYP 163
Query: 519 TILEVEMPFDKTKNQRKGFCFI 584
T + + +D+ + +GF F+
Sbjct: 164 TCSDARVMWDQKTGRSRGFGFV 185
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 156 DSQDHNSAEAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGE--IESINVKTDPNTG 320
D +D + EAP + ++VG L+ E + +L HF + G IE + V+ D G
Sbjct: 243 DGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFG 300
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 44.0 bits (99), Expect = 7e-05
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Frame = +3
Query: 174 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 174 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 228
Query: 351 KAPESIDKVMAAGEHTINNK----------KVDPKKAKARHGKIFVGGLSSEISDDEIRN 500
+ M A ++T+ K K +P + G + + + + +S+DE+
Sbjct: 229 YDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQ 288
Query: 501 FFSEFGTILEV 533
F +G I E+
Sbjct: 289 LFGAYGEIREI 299
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 44.0 bits (99), Expect = 7e-05
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Frame = +3
Query: 174 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 187 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 241
Query: 351 KAPESIDKVMAAGEHTINNK----------KVDPKKAKARHGKIFVGGLSSEISDDEIRN 500
+ M A ++T+ K K +P + G + + + + +S+DE+
Sbjct: 242 YDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQ 301
Query: 501 FFSEFGTILEV 533
F +G I E+
Sbjct: 302 LFGAYGEIREI 312
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 44.0 bits (99), Expect = 7e-05
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 365
R +FVG + ++ T+++LR+ G G + S + TD TG+ +G+ F +K E+
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET 62
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 581
+FVG + + +++++R E G ++ + D+ + KG+ F
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGF 54
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 43.6 bits (98), Expect = 1e-04
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 19/165 (11%)
Frame = +3
Query: 147 GGGDSQDHNSAEAPGRDDDR--KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 320
GG + S A D KL+V +S T+ ++R F YG + I + D TG
Sbjct: 89 GGSSLRKRRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTG 148
Query: 321 RSRGFAFIVFKAPESIDKVMAA--GEHTINNKKVDPK-----KAKARHG----------K 449
+ FI +K E + +AA + T + + K + R G K
Sbjct: 149 ERAAYCFIKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPK 208
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
++V L+ + + E+ FS +G I ++ M D K R G+ F+
Sbjct: 209 LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICR-GYAFV 252
Score = 37.1 bits (82), Expect = 0.009
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 198 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 362
D+ KL+V L+ +TT E+ + F YG IE I + D + RG+AF+ F E
Sbjct: 205 DNPKLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALD-DMKICRGYAFVQFSCKE 258
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 389
LFVG LS TT+ LR+ YG I+++ + TG SRG+ F+ ++ + + +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 390 EHTI 401
H++
Sbjct: 126 HHSL 129
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Frame = +3
Query: 159 SQDHNSAEAPGRDDDRK------LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 320
S+D S + GR ++ + V G+ ET ++++ + FG +GEI+++N+ D +G
Sbjct: 74 SRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSG 133
Query: 321 RSRGFAFIVFKAPESIDKVMAA 386
+G+A I ++ E ++A
Sbjct: 134 YVKGYALIEYEKKEEAQSAISA 155
Score = 33.9 bits (74), Expect = 0.080
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
I V G+ E +++I N F +FG I + + D+ KG+ I
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALI 141
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 43.2 bits (97), Expect = 1e-04
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 27/144 (18%)
Frame = +3
Query: 201 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 377
D +FVG L+ + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 378 MA---AGEHTINNKKVDPKKAKARHGKIFVGG-----------------------LSSEI 479
M + + ++ P + +G GG L S +
Sbjct: 258 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSV 317
Query: 480 SDDEIRNFFSEFGTILEVEMPFDK 551
+D++++ FSEFG I+ V++P K
Sbjct: 318 TDEDLKQPFSEFGEIVSVKIPVGK 341
Score = 37.5 bits (83), Expect = 0.007
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +3
Query: 114 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 293
T + NG + GG + G + +FVGGL TD++L+ F +GEI S+
Sbjct: 277 TPRKTNGYQQQGGY-MPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSV 335
Query: 294 NVKTDPNTGRSRGFAFIVFK--APESIDKV 377
+ G+ GF V + A E+++K+
Sbjct: 336 KIP----VGKGCGFVQFVNRPNAEEALEKL 361
Score = 35.9 bits (79), Expect = 0.020
Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 17/146 (11%)
Frame = +3
Query: 198 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN--TGRSRGFAFIVFKAPESID 371
+++ ++VG L + L F + E E +++K N G S G+ F+ F++ + D
Sbjct: 101 ENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVAD 160
Query: 372 KVM-----AAGEHTINNKKVD------PKKAKARHG---KIFVGGLSSEISDDEIRNFFS 509
KV+ A +T +++ +K +G IFVG L+ ++SD + FS
Sbjct: 161 KVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFS 220
Query: 510 E-FGTILEVEMPFDKTKNQRKGFCFI 584
E + ++ ++ D + KG+ F+
Sbjct: 221 EKYPSVKAAKVVLDANTGRSKGYGFV 246
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 42.3 bits (95), Expect = 2e-04
Identities = 26/79 (32%), Positives = 41/79 (51%)
Frame = +3
Query: 159 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 338
+QDH SA + V GLS ++T+++L +G + + V + N+G SRGFA
Sbjct: 288 NQDHFSATPSAT-----VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFA 342
Query: 339 FIVFKAPESIDKVMAAGEH 395
FI F ++ +M EH
Sbjct: 343 FIDFPTVDAARTMMDRIEH 361
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 389
L V GL + ++ LR F + I+ + + D T SRGFAF+ F + E K + A
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519
Query: 390 EHTI---NNKKVDPKKAKARHG 446
T N K + AK+ HG
Sbjct: 520 NRTALERNGKILRVAYAKSVHG 541
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
R +FV + + T L HF +GE+ + TDP TG+ G A+I F E+ + ++
Sbjct: 516 RTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +3
Query: 192 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 371
R+D+ + V LS +T + +L + F +G + + V D TG SRGF F+ F + E
Sbjct: 209 RNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQ 268
Query: 372 KVM 380
+ +
Sbjct: 269 RAI 271
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 42.3 bits (95), Expect = 2e-04
Identities = 25/61 (40%), Positives = 39/61 (63%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 389
L+VG L+ ETT+ +L + FG YG+I+ I V + SRGFAFI ++ +++ +AA
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYS------SRGFAFIYYR---HVEEAVAAK 70
Query: 390 E 392
E
Sbjct: 71 E 71
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTI 524
++VGG+ +S D++ FS+FG I
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKI 276
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +3
Query: 159 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 338
SQ+ + E + RKLFV L W + ++ + FG G + ++ + + G++RGFA
Sbjct: 80 SQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFA 138
Query: 339 FIVFKAPE 362
F+ + E
Sbjct: 139 FVTMASGE 146
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +3
Query: 183 APGRDDDRKLFVGGLSWETTDKELRDHFGA--YGEIESINVKTDPNTGRSRGFAFIVFKA 356
APG D KL+V L+W+ LR+ F A + + + V DP GRS G+ F+ F
Sbjct: 188 APG-DTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFAT 245
Query: 357 PESIDKVM 380
E + +
Sbjct: 246 REEAENAI 253
Score = 33.9 bits (74), Expect = 0.080
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +3
Query: 369 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 548
+K +A E T +K + + K+FV L +S ++I F + GT+ VE+
Sbjct: 70 EKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ 129
Query: 549 KTKNQRKGFCFI 584
K + +GF F+
Sbjct: 130 K-DGKNRGFAFV 140
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +3
Query: 180 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTD 308
E P + + L+VGGL+ ++++ DHF AYGE+ESI V +
Sbjct: 217 EPPEDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAE 259
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 201 DRKLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVF 350
D +FVG L+ + +D L + F G Y ++ V D NTGRS+G+ F+ F
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/56 (32%), Positives = 34/56 (60%)
Frame = +3
Query: 384 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 551
AG H N D ++ + IFVGGL ++++++++ FS+FG ++ V++P K
Sbjct: 310 AGGHGGNGSMSD---GESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGK 362
Score = 37.1 bits (82), Expect = 0.009
Identities = 22/96 (22%), Positives = 43/96 (44%)
Frame = +3
Query: 123 QLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 302
Q NG+ N + + G ++ +FVGGL + T+++L F +GE+ S+ +
Sbjct: 300 QQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP 359
Query: 303 TDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 410
+G F+ F +S ++ + T+ K
Sbjct: 360 V------GKGCGFVQFANRQSAEEAIGNLNGTVIGK 389
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 359
LFVG L W TTD EL YG ++ + + +G+S+G+ + F P
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDP 285
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC 578
+FVG L +D E+ ++G + EV+ +K + KG+C
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYC 278
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 40.7 bits (91), Expect = 7e-04
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 371
+++G +S+ TT+++L + F GEI+ I + D NT GF F++F + E +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTE 89
Score = 34.3 bits (75), Expect = 0.061
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+++G +S +++++ FS G I ++ M DK GFCF+
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFV 80
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +3
Query: 195 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 374
DD ++VGGL ++ T++ +R F YG + ++ + D + R + + F+ F S D
Sbjct: 4 DDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADD 62
Query: 375 VMAAGE-HTINNKKVDPKKAKARHGKIFVG 461
+ + +I + V R G++ G
Sbjct: 63 AIEDMDGKSIGGRAVRVNDVTTRGGRMNPG 92
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 39.9 bits (89), Expect = 0.001
Identities = 28/97 (28%), Positives = 42/97 (43%)
Frame = +3
Query: 150 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 329
G +D +E P ++D +LF G L E D L F + V D TG+++
Sbjct: 121 GQSWEDPTLSEWP--ENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTK 178
Query: 330 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 440
G+ F+ F P +AA +N K V + K R
Sbjct: 179 GYGFVSFLNPAD----LAAALKEMNGKYVGNRPIKLR 211
Score = 33.5 bits (73), Expect = 0.11
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
++F G L +E++DD + F+ F T ++ DK + KG+ F+
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFV 183
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +3
Query: 195 DDDRKLFVGGLSWETTDKELRDHF----GAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 362
D R +F+G L ++ D+E+ F IE++ V DP+ +G A+++FK E
Sbjct: 280 DPKRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTRE 339
Query: 363 SIDKVMAAGEHTINNKKVDPKKAK 434
+ + V+ G + +++ + K
Sbjct: 340 AANLVLKKGYLKLRERELRISRVK 363
Score = 33.9 bits (74), Expect = 0.080
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Frame = +3
Query: 189 GRDDDRKL----FVGGLSWETTDKELRDHFGAYGEIESINVKTDP--NTGRSRGFAFIVF 350
G DD+ KL FVG L + K + F +GE+ES+ +++ P ++ R+R A ++
Sbjct: 162 GFDDESKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLK 221
Query: 351 KAPESIDKVMA 383
+ E V A
Sbjct: 222 QINEKASSVHA 232
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +3
Query: 153 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 332
G + ++ R D+ + V LS +T +L + F +G + +V D T SRG
Sbjct: 157 GADRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRG 216
Query: 333 FAFIVFKAPESIDKVM 380
F F+ F + E + +
Sbjct: 217 FGFVSFVSREDAQRAI 232
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +3
Query: 405 NKKVDPKKAKARHGK--IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC 578
++K ++RH + + V LS + ++ F FG + + D+ + +GF
Sbjct: 159 DRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFG 218
Query: 579 FI 584
F+
Sbjct: 219 FV 220
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 389
L+V L + T+ ++ F +G++ + V D +T +SRG AF+++ + E K +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 390 EHTINN 407
+ I N
Sbjct: 119 DAKILN 124
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.5 bits (88), Expect = 0.002
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Frame = +3
Query: 135 NAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 311
N NG G + +H E P R LFV ++ D EL F YG+I ++
Sbjct: 148 NIPNGAGTVAGEHPYGEHPSRT----LFVRNINSNVEDSELTALFEQYGDIRTLY----- 198
Query: 312 NTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVD---------PKKAKARHGKIFVG 461
T + RGF I + S M + ++ + +K+D P + G + V
Sbjct: 199 TTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVF 258
Query: 462 GLSSEISDDEIRNFFSEFGTILEV 533
L IS+D++ F G I E+
Sbjct: 259 NLDPSISNDDLHGIFGAHGEIKEI 282
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.5 bits (88), Expect = 0.002
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Frame = +3
Query: 135 NAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 311
N NG G + +H E P R LFV ++ D EL F YG+I ++
Sbjct: 148 NIPNGAGTVAGEHPYGEHPSRT----LFVRNINSNVEDSELTALFEQYGDIRTLY----- 198
Query: 312 NTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVD---------PKKAKARHGKIFVG 461
T + RGF I + S M + ++ + +K+D P + G + V
Sbjct: 199 TTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVF 258
Query: 462 GLSSEISDDEIRNFFSEFGTILEV 533
L IS+D++ F G I E+
Sbjct: 259 NLDPSISNDDLHGIFGAHGEIKEI 282
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
LFVG L W TTD E+ YG ++ I + +G+S+G+ + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
Score = 32.3 bits (70), Expect = 0.24
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC 578
+FVG L +D EI + S++G + E++ ++ + KG+C
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYC 246
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +3
Query: 159 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 338
S+DH S+ G L + L + +LRD F +G ++ I + + TG RGF
Sbjct: 38 SRDHESSGPSG------LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFG 91
Query: 339 FIVFKAPESIDKVMAAGEHTI 401
F+ ++ E + M H +
Sbjct: 92 FVKYRYAEDAAEAMKRMNHKV 112
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 362
K+ V L + T++ L+ F A+GEI + + D RS+G+AFI F + +
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
Score = 36.3 bits (80), Expect = 0.015
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
KI V L S+D ++ FS FG I EV++ D+ + KG+ FI
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFI 86
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Frame = +3
Query: 150 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 329
GG ++ P ++ L++G + + E+ F +G ++ + V + TG+S+
Sbjct: 42 GGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSK 101
Query: 330 GFAFIVFKAPESIDKVMAAG--------EHTINNKKVDPKKAK 434
F FI F+ PE + +AAG EH + ++P+ K
Sbjct: 102 HFGFIQFEDPEVAE--IAAGAMNDYLLMEHMLKVHVIEPENVK 142
Score = 33.5 bits (73), Expect = 0.11
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+++G + + EI FFS+FGT+ V + +K + K F FI
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFI 106
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 159 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 335
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 70 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 128
Query: 336 AFIVF 350
A +V+
Sbjct: 129 AEVVY 133
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 159 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 335
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 6 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 64
Query: 336 AFIVF 350
A +V+
Sbjct: 65 AEVVY 69
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +3
Query: 159 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 335
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 72 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 130
Query: 336 AFIVF 350
A +V+
Sbjct: 131 AEVVY 135
Score = 31.1 bits (67), Expect = 0.57
Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = +3
Query: 300 KTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG-----KIFVGG 464
+ +PN +R + KAPES G +++ D + ++ G K+++
Sbjct: 40 RNNPNRKSTRSAPYQSAKAPES-----TWGHDMFSDRSEDHRSGRSSAGIETGTKLYISN 94
Query: 465 LSSEISDDEIRNFFSEFGTILEVEMPFDKT 554
L + +++I+ F+E G + + FD++
Sbjct: 95 LDYGVMNEDIKELFAEVGELKRYTVHFDRS 124
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 37.9 bits (84), Expect = 0.005
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 25/130 (19%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI------- 368
++V L TD +L+ FG +GEI S V D G+SR F F+ F+ E+
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 369 ------DKVMAAGEHTINNKKVDPKKAK-----------ARHG-KIFVGGLSSEISDDEI 494
+K + G + + KAK R G ++V L + + ++
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 495 RNFFSEFGTI 524
FSEFGTI
Sbjct: 240 EELFSEFGTI 249
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 417 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
DP + G +FV L I + ++ + FS FG +L ++ D KG+ F+
Sbjct: 22 DPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFV 76
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 371
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDAD 59
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 132 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 284
G GGGD P R + ++ V GL + ++L+DH GE+
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEV 146
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 371
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDAD 59
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 132 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 284
G GGGD P R + ++ V GL + ++L+DH GE+
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEV 146
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 37.5 bits (83), Expect = 0.007
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
++VGGL+ E+++ + F FG I +V+ P D+ + + F F+
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFV 59
Score = 35.1 bits (77), Expect = 0.035
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 380
L+VGGL+ E + L F +G+I+ + D + R F F+ F E M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAM 71
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +3
Query: 201 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 371
+R ++VG L + E+ D F YG I I++K P R G+AF+ F+ P D
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDPRDAD 59
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 159 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 284
S ++++ AP R D ++ V GL + ++L+DH G++
Sbjct: 94 SSSYSASRAPSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDV 135
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 36.7 bits (81), Expect = 0.011
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 441 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
HG + V + + +E+R F FG + +V +P D Q +GF F+
Sbjct: 46 HGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFV 93
Score = 35.1 bits (77), Expect = 0.035
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
L V + + +ELR+ F +G + + + D +G+ RGFAF+ F
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 36.3 bits (80), Expect = 0.015
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +3
Query: 180 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 359
E P + LFV LS +T ++ D F GE+ SI + + + G+ G+ F+ F +
Sbjct: 236 ERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVN-HEGKHVGYGFVEFASA 294
Query: 360 ESIDKVM 380
+ K +
Sbjct: 295 DETKKAL 301
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +3
Query: 201 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 380
++ LFV L +ET + D F GE+ + + + G+ G F+ F + ++ +
Sbjct: 126 EKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLK-GKLVGCGFVEFASVNEAEEAL 184
Query: 381 AA--GEHTINNK 410
GE NNK
Sbjct: 185 QKKNGECLDNNK 196
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.3 bits (80), Expect = 0.015
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 30.3 bits (65), Expect = 0.99
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +3
Query: 114 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 284
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 36.3 bits (80), Expect = 0.015
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 30.3 bits (65), Expect = 0.99
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +3
Query: 114 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 284
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.3 bits (80), Expect = 0.015
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 350
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 30.3 bits (65), Expect = 0.99
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +3
Query: 114 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 284
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 35.9 bits (79), Expect = 0.020
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +3
Query: 180 EAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKA 356
E P LFV L++E K L++ F A G + S V N RS G+ F+ FK
Sbjct: 181 ETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKT 240
Query: 357 PESIDKVM 380
+ + +
Sbjct: 241 KKQAEAAL 248
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 35.1 bits (77), Expect = 0.035
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +3
Query: 222 GLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 401
GLS TTD+ LR F + + +K D T R +GF FI F++ + K + A I
Sbjct: 77 GLSAYTTDQSLRQLFAPFARL----IK-DQQTQRPKGFGFITFESEDDAQKALKALNGKI 131
Query: 402 NNKKV 416
N ++
Sbjct: 132 VNGRL 136
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 35.1 bits (77), Expect = 0.035
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 359
+++VG L T++EL D F A+G + S+ V P G+AF+ F+ P
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRP-----PGYAFLDFEDP 48
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 34.7 bits (76), Expect = 0.046
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 135 NAENGGGDSQDHNSA--EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 305
NA NG S + P ++ D+ L++G L D L + F ++GEI V
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIK 513
Query: 306 DPNTGRSRGFAFIVF 350
D TG S+G+ F+ +
Sbjct: 514 DRVTGLSKGYGFVKY 528
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = +3
Query: 381 AAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 560
A+ + + P + +++G L + DD + N FS FG I+ ++ D+
Sbjct: 459 ASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTG 518
Query: 561 QRKGFCFI 584
KG+ F+
Sbjct: 519 LSKGYGFV 526
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 34.7 bits (76), Expect = 0.046
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 135 NAENGGGDSQDHNSA--EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 305
NA NG S + P ++ D+ L++G L D L + F ++GEI V
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIK 513
Query: 306 DPNTGRSRGFAFIVF 350
D TG S+G+ F+ +
Sbjct: 514 DRVTGLSKGYGFVKY 528
Score = 33.5 bits (73), Expect = 0.11
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = +3
Query: 381 AAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 560
A+ + + P + +++G L + DD + N FS FG I+ ++ D+
Sbjct: 459 ASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTG 518
Query: 561 QRKGFCFI 584
KG+ F+
Sbjct: 519 LSKGYGFV 526
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 34.7 bits (76), Expect = 0.046
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +3
Query: 114 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIES 290
T ++ G+ +GGG S+ +S+ P + LFV + T ++L HF YG+I +
Sbjct: 31 TKSERGGDKRSGGG-SRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVN 85
Query: 291 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 398
+ ++ R FAFI ++A E + + A ++
Sbjct: 86 VRIR--------RNFAFIQYEAQEDATRALDASNNS 113
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 34.7 bits (76), Expect = 0.046
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +3
Query: 114 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIES 290
T ++ G+ +GGG S+ +S+ P + LFV + T ++L HF YG+I +
Sbjct: 72 TKSERGGDKRSGGG-SRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVN 126
Query: 291 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 398
+ ++ R FAFI ++A E + + A ++
Sbjct: 127 VRIR--------RNFAFIQYEAQEDATRALDASNNS 154
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 34.7 bits (76), Expect = 0.046
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 389
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----A 155
Query: 390 EHTINNKKVDPKKAKA 437
+ ++ ++D K KA
Sbjct: 156 QLYMDGAQIDGKVVKA 171
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 423 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
KKA + V LS +++ ++ F FG ++ VE+ D+ N +G ++
Sbjct: 91 KKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYV 144
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 34.7 bits (76), Expect = 0.046
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 389
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----A 155
Query: 390 EHTINNKKVDPKKAKA 437
+ ++ ++D K KA
Sbjct: 156 QLYMDGAQIDGKVVKA 171
Score = 33.1 bits (72), Expect = 0.14
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 423 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
KKA + V LS +++ ++ F FG ++ VE+ D+ N +G ++
Sbjct: 91 KKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYV 144
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 34.3 bits (75), Expect = 0.061
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 243 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 419
++++ D+F +G ++ + + + R F F+ F PE++ ++A G H + + +V
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQ----QKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVL 224
Query: 420 PKKAKARHGKI 452
K K + GK+
Sbjct: 225 VKPYKEK-GKV 234
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 34.3 bits (75), Expect = 0.061
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +3
Query: 213 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 392
F L + L +F ++GEI + V TG S G+A+I K E +K + G
Sbjct: 241 FDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALELGR 298
Query: 393 HTI 401
H +
Sbjct: 299 HDV 301
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 34.3 bits (75), Expect = 0.061
Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 10/145 (6%)
Frame = +3
Query: 180 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 359
E P D + V LS T ++ F ++ S+ + + + G+ G+ F+ F +
Sbjct: 150 ETPPDFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVN-HEGKHVGYGFVEFASA 208
Query: 360 ESIDKVMAA--GEHTINNKKVDPK--------KAKARHGKIFVGGLSSEISDDEIRNFFS 509
+K + GE+ N+K + K + A +FV L I +I NFF
Sbjct: 209 YGANKALEEKNGEYLHNHKILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFK 268
Query: 510 EFGTILEVEMPFDKTKNQRKGFCFI 584
+ G ++ V + ++ + G+ F+
Sbjct: 269 DVGEVVHVRL-IVNSQGKHAGWGFV 292
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 33.9 bits (74), Expect = 0.080
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 569
+FV G S +S+ ++ FSEFG + E F +KN RK
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTN-EHYFSGSKNHRK 98
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 33.9 bits (74), Expect = 0.080
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+FV G S +S+ ++ FSEFG + V++ ++ Q G+ ++
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYV 104
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 33.9 bits (74), Expect = 0.080
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+FV G S +S+ ++ FSEFG + V++ ++ Q G+ ++
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYV 123
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 33.9 bits (74), Expect = 0.080
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 417 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEV 533
+P++ + GKIFVG L + I E FF +FG I V
Sbjct: 156 NPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENV 194
Score = 33.9 bits (74), Expect = 0.080
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIES-INVKTDPNTGRSRGFAFIVFKAPESIDKVM 380
K+FVG L E + F +G IE+ I +K ++ GF FI++ A +S K +
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAV 224
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 33.9 bits (74), Expect = 0.080
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 581
+++G + +SD + + + G ++++ +P DK ++ KGF F
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAF 52
Score = 31.5 bits (68), Expect = 0.43
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 371
+++G + +D+ L D G + +++ D T + +GFAF ++ E D
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIAD 62
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 33.9 bits (74), Expect = 0.080
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 276 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
G ++++ V TDP T +G AF+ F ES+ K +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 33.1 bits (72), Expect = 0.14
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +3
Query: 228 SWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 362
S T++ LRD F GEI + +K + G+SR FA+I F+ +
Sbjct: 11 SKHVTEERLRDVFSRKGEIADVKLKR-KSDGKSRQFAYIGFRTEQ 54
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/87 (24%), Positives = 43/87 (49%)
Frame = +3
Query: 156 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 335
+ +H S+ P + L++ L + +++ L F +G++ +V G SRGF
Sbjct: 3 NDDNHGSSSCPRKFTS--LYIANLDAQVSEEMLFLMFSDFGKVIR-SVLAKDFRGESRGF 59
Query: 336 AFIVFKAPESIDKVMAAGEHTINNKKV 416
AFI F++ +S + M + + +K+
Sbjct: 60 AFIEFESADSAGRAMLHMDGRLIGQKI 86
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 33.1 bits (72), Expect = 0.14
Identities = 24/84 (28%), Positives = 40/84 (47%)
Frame = +3
Query: 192 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 371
RD+ R LFV GL + +E+ + F + E+ ++++ ++ FAF VF +S
Sbjct: 31 RDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDG---AKPFAFAVFSDLQSAV 87
Query: 372 KVMAAGEHTINNKKVDPKKAKARH 443
VM H +N D +K H
Sbjct: 88 AVM----HALNGMVFDLEKHSTLH 107
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 32.7 bits (71), Expect = 0.19
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +3
Query: 192 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 359
R DDR +L+VG LS T ++L F YG + +++K D +AF+ F P
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFSDP 54
Query: 360 ESID 371
D
Sbjct: 55 RDAD 58
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 548
+++VG LSS ++ FS +G + +V+M D
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 240 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKK- 413
TD+++ ++FG +G ++ + + + R F F+ F E++ ++A G H I + +
Sbjct: 331 TDEDVSNYFGNFGPVQDVRIPYQ----QKRMFGFVTFLHSETVRIILARGNPHFICDSRV 386
Query: 414 -VDPKKAKAR 440
V P K K R
Sbjct: 387 LVKPYKEKGR 396
Score = 29.5 bits (63), Expect = 1.7
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = +3
Query: 471 SEISDDEIRNFFSEFGTILEVEMPFDKTK 557
S +D+++ N+F FG + +V +P+ + +
Sbjct: 328 SSFTDEDVSNYFGNFGPVQDVRIPYQQKR 356
>At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing
protein predicted proteins - Arabidopsis thaliana
Length = 259
Score = 32.3 bits (70), Expect = 0.24
Identities = 17/71 (23%), Positives = 39/71 (54%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 383
R + VG LS T+ ++++ F GE+ESI+++++ ++ A++ FK + + +
Sbjct: 6 RSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS------AYVTFKETQGAETAVL 59
Query: 384 AGEHTINNKKV 416
+I ++ V
Sbjct: 60 LSGASIADQSV 70
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 32.3 bits (70), Expect = 0.24
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 353
+++VG L T++EL D F ++G I S+ V P G+AF+ F+
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRP-----PGYAFLDFE 46
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 31.9 bits (69), Expect = 0.32
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 243 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 419
D+++ +F +G ++ + + + R F F+ F PE++ V+A G H I + +V
Sbjct: 273 DEDVATYFSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARGNPHFICDSRVL 328
Query: 420 PKKAKARHGKI 452
K K + GK+
Sbjct: 329 VKPYKEK-GKV 338
Score = 29.1 bits (62), Expect = 2.3
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 471 SEISDDEIRNFFSEFGTILEVEMPFDKTK 557
S D+++ +FS FGT+ +V +P+ + +
Sbjct: 269 STFKDEDVATYFSLFGTVQDVRIPYQQKR 297
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 31.9 bits (69), Expect = 0.32
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +3
Query: 243 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 419
++++ ++F +G ++ + + + R F F+ F PE++ ++A G H + + +V
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVL 327
Query: 420 PKKAKARHGKI 452
K K + GK+
Sbjct: 328 VKPYKEK-GKV 337
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 31.9 bits (69), Expect = 0.32
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +3
Query: 192 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 359
R DDR +L+VG LS T ++L F YG + +++K D +AF+ F P
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFGDP 54
Query: 360 ESID 371
D
Sbjct: 55 RDAD 58
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 548
+++VG LSS ++ FS +G + +V+M D
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.9 bits (69), Expect = 0.32
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 383
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.9 bits (69), Expect = 0.32
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 207 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 383
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 31.5 bits (68), Expect = 0.43
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +3
Query: 141 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIESINVKTDPNT 317
+ GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 75 DRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR----- 129
Query: 318 GRSRGFAFIVFKAPESIDKVMAA 386
R FAFI ++A E + + A
Sbjct: 130 ---RNFAFIQYEAQEDATRALDA 149
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 31.5 bits (68), Expect = 0.43
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +3
Query: 141 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIESINVKTDPNT 317
+ GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 75 DRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR----- 129
Query: 318 GRSRGFAFIVFKAPESIDKVMAA 386
R FAFI ++A E + + A
Sbjct: 130 ---RNFAFIQYEAQEDATRALDA 149
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 31.5 bits (68), Expect = 0.43
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 353
R +FVG +ET +L F YG ++ +++K+ G+AF+ F+
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS--------GYAFVYFE 43
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 150 GGDSQDHNSAEAPGRDDDRK-LFVGGLS-WETTDKELRDHFGAYGEIESINVKTDPNTGR 323
G + A+AP K LFV T + ++ HF YG++ ++ ++
Sbjct: 74 GERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIR------- 126
Query: 324 SRGFAFIVFKAPESIDKVMAAGEHT 398
R F+F+ F+ E K + A + +
Sbjct: 127 -RNFSFVQFETQEDATKALEATQRS 150
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 31.1 bits (67), Expect = 0.57
Identities = 23/80 (28%), Positives = 38/80 (47%)
Frame = +3
Query: 210 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 389
L V L+ ++++L + FG YGEI+ I + PN R F+ F S D + A
Sbjct: 224 LVVFNLAPSVSNRDLENIFGVYGEIKEI--RETPN---KRHHKFVEFFDVRSADAALKA- 277
Query: 390 EHTINNKKVDPKKAKARHGK 449
+N ++ K+ K H +
Sbjct: 278 ---LNRTEIAGKRIKLEHSR 294
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 30.7 bits (66), Expect = 0.75
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 353
R ++VG L + + E+ D F YG I I +K P R + F+ F+
Sbjct: 7 RSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP---RPPCYCFVEFE 53
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 30.7 bits (66), Expect = 0.75
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +3
Query: 453 FVGGLSSEISDDEIRNFFSEFGTILEVEMPF 545
+VG L S+ +++++N FS+FG ++ + F
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVRF 41
>At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 193
Score = 30.3 bits (65), Expect = 0.99
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +3
Query: 243 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 380
++++RDHF YGEIESI + P+ G AF+ + + +K M
Sbjct: 91 EQDIRDHFCPYGEIESIVI--FPHRGGGT-CAFLTYTTRLAAEKAM 133
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 30.3 bits (65), Expect = 0.99
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +3
Query: 204 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 362
R L+VG L ++EL D F +GE+ES+ + GRS +AF+ F E
Sbjct: 23 RHLWVGNLPHGILERELADRFLRFGELESLAFQ----PGRS--YAFVNFNHDE 69
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 30.3 bits (65), Expect = 0.99
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 575
KIF+GG S IS + + S FG + + NQR F
Sbjct: 41 KIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAF 83
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 387 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 524
GE NN + + + + VG +SS + D E++ F +FG I
Sbjct: 198 GERGGNNSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFGDI 243
>At4g16810.1 68417.m02538 expressed protein similar to vernalization
2 protein [Arabidopsis thaliana] GI:16945788, embryonic
flower 2 [Arabidopsis thaliana] GI:14276050,
fertilization-independent seed 2 protein [Arabidopsis
thaliana] GI:4185499
Length = 623
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +1
Query: 391 NTPSTTRK*TQRRLKHDMGRFLSEDSAVKSQM---MKSETSSVNLELS*KWRCPLTKQR 558
NT + + + LK G +E+ K ++ M ++ SSV E++ KWRCP +R
Sbjct: 547 NTEVLVKCSSSKELKTKAGEDNTEEREKKRRVLGEMSNQLSSVAKEIAGKWRCPQKNKR 605
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 129 NGNAENGG--GDSQDHNSAEAPGRDDDR 206
+GN E G GD D++ + PG DDD+
Sbjct: 962 DGNHERGSESGDGDDYDDGDGPGSDDDK 989
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 447 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
++ VGGL + D++ FS GT+ VE F +TK + F +I
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVE--FVRTKG--RSFAYI 52
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 168 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 329
+N A G D + LFV L++E+++ +++ F +YG I+ + G R
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVGYSEHSLAGSVR 179
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 87 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDR 206
NDN + +N N N NGGG ++ S P R+ DR
Sbjct: 119 NDNNGNNNNGNNNDNNNQNNGGG--SNNRSPPPPSRNSDR 156
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 84 NNDNFAQDITTDNQLNGNAENGGGDSQDHNS 176
NN N D +N N N +N G+++D+N+
Sbjct: 76 NNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 259
Score = 29.5 bits (63), Expect = 1.7
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +3
Query: 201 DRKLFVGGLSWETTDKELR----DHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 368
D LFV G E++ +HF + G++ I V +TG S G+AFI K
Sbjct: 116 DSALFVQGFDTSHPRHEIKTALWNHFSSCGKVYLIYVPIACSTGASVGYAFIDMK--NET 173
Query: 369 DKVMAAGEHTINNKKVD 419
+ G H + +K+D
Sbjct: 174 KGLTLNGSH-LGGRKID 189
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+ V L + +++R F +FG + ++ +P D +GF F+
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFV 82
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFI 584
+ V L + +++R F +FG + ++ +P D +GF FI
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFI 83
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 129 NGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRD 260
+G AE+GGG S SA A +DD G + E+RD
Sbjct: 78 SGGAEDGGGTSNGSLSASATATEDDELAI--GTGYRLPPPEIRD 119
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 177 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 302
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 177 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 302
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 569
++VG LS ++ ++ + F FG I V++ + +T +++
Sbjct: 181 LYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKR 220
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 252 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 380
L HF + GEI + V TD G + AF+ + + DK +
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEGEGAEDKAL 175
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 252 LRDHFGAYGEIESINVKTDPNTGRSRGF 335
L HF GEI + V +P+TG +GF
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF 391
>At5g22830.1 68418.m02669 magnesium transporter CorA-like family
protein weak similarity to SP|Q01926 RNA splicing
protein MRS2, mitochondrial precursor {Saccharomyces
cerevisiae}; contains Pfam profile PF01544: CorA-like
Mg2+ transporter protein; supporting cDNA
gi|12007446|gb|AF322255.1|AF322255
Length = 459
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 81 ANNDNFAQDITTDNQ-LNGNAENGGGDSQDHNSAEAPGRDDDRKL 212
A + A+D D + LN + ++ G DS + GRDD +K+
Sbjct: 65 AKSPTTAEDFVGDYESLNVSDDDDGSDSNSSDGDNGGGRDDSKKI 109
>At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing
protein RRM, RNA recognition motif
Length = 87
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +3
Query: 252 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 416
L +HF + G I ++ + P T G A I ++ +KVM + +K+
Sbjct: 5 LTNHFKSCGVIAMVSFRRHPETDVVNGLATITMMGNDADEKVMLLNGSELGGRKL 59
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = +3
Query: 450 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 569
++V LSS++ ++ + F FG I V++ + +T+ +++
Sbjct: 189 LYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKR 228
>At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing
protein
Length = 313
Score = 27.5 bits (58), Expect = 7.0
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +3
Query: 216 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 395
V +S TD++L++ F G+I + ++T T R++ A++ FK + + +
Sbjct: 8 VSNVSLGATDRDLKEFFSFSGDI--LYLETQSETERTK-LAYVTFKDLQGAETAVLLSGA 64
Query: 396 TINNKKV 416
TI + V
Sbjct: 65 TIVDSSV 71
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 237 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 416
T ++++ HF YG++ ++ ++ R FAF+ F E K + + T N+K +
Sbjct: 81 TRERDMERHFEPYGKVLNVRMR--------RNFAFVQFATQEDATKAL---DSTHNSKLL 129
Query: 417 D 419
D
Sbjct: 130 D 130
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 27.5 bits (58), Expect = 7.0
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +3
Query: 237 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 416
T ++++ HF YG++ ++ ++ R FAF+ F E K + + T N+K +
Sbjct: 107 TRERDMERHFEPYGKVLNVRMR--------RNFAFVQFATQEDATKAL---DSTHNSKLL 155
Query: 417 D 419
D
Sbjct: 156 D 156
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 27.5 bits (58), Expect = 7.0
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = -1
Query: 289 LSISPYAPKXXXXXXXXXXXXSPPTKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVV 110
LS S +P +PP S LS S P +L S PPP S+ PLS LS
Sbjct: 27 LSPSSSSPSLSPSPPSSSPSSAPP--SSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPS 84
Query: 109 IS 104
+S
Sbjct: 85 LS 86
>At1g04950.2 68414.m00493 TATA box-binding protein-associated factor
(TAF) family protein contains Pfam profile: PF02969 TATA
box binding protein associated factor
Length = 549
Score = 27.5 bits (58), Expect = 7.0
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 396 TINNKKVDPKKAKARH-GKI-FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 569
T+ N +DPKKA +H G I + L + I + + ++LE E+ +K KNQ K
Sbjct: 310 TLVNALLDPKKALTQHYGAIQGLAALGHTVVRLLILSNLEPYLSLLEPELNAEKQKNQMK 369
>At1g04950.1 68414.m00492 TATA box-binding protein-associated factor
(TAF) family protein contains Pfam profile: PF02969 TATA
box binding protein associated factor
Length = 549
Score = 27.5 bits (58), Expect = 7.0
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 396 TINNKKVDPKKAKARH-GKI-FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 569
T+ N +DPKKA +H G I + L + I + + ++LE E+ +K KNQ K
Sbjct: 310 TLVNALLDPKKALTQHYGAIQGLAALGHTVVRLLILSNLEPYLSLLEPELNAEKQKNQMK 369
>At5g49760.1 68418.m06163 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 953
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 4/33 (12%)
Frame = -1
Query: 421 GSTFLLLM----VCSPAAMTLSIDSGALNTMKA 335
G++ LL++ +CS +A+T +D+ ALN +K+
Sbjct: 6 GASLLLILFFFQICSVSALTNGLDASALNALKS 38
>At1g09810.1 68414.m01101 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 428
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 126 LNGNAENGGGDSQDHN-SAEAPGRDD 200
+NGN+ NG D +DHN E G D
Sbjct: 113 INGNSNNGFWDQRDHNKKPERNGESD 138
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,045,927
Number of Sequences: 28952
Number of extensions: 276416
Number of successful extensions: 1442
Number of sequences better than 10.0: 241
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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