Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0746
         (607 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   1.5  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   2.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   4.6  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   6.1  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   8.1  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   8.1  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   8.1  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -2

Query: 366 CKVSPCSE-GTFYSAYRSWDRVCRE 295
           CKV+PC   GT      ++  +C+E
Sbjct: 72  CKVNPCENGGTCVDKINAFQCICKE 96


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
 Frame = +2

Query: 26  TPERSVSPLTV-VPKMAHRHQPGEKHSSVISKGKLTAYFL--PH*EEKYHSPDHPLRP-T 193
           TP  S SP TV + K + + Q      ++   G  T+  +  P       +  H      
Sbjct: 226 TPSTSASPPTVNIKKESPQMQSYRPTGNITPHGSNTSSLITTPSPSASPLAYQHEYNSFN 285

Query: 194 YTLGQEG*VPGSHPGCIHDIPPTHKNSPQPCRIHSRQTLSH 316
           +T    G    SH     +  PT+    QP  ++S+ T +H
Sbjct: 286 WTANGHGHNTSSHNYYAQNYAPTYYGQMQPDYLNSQTTQNH 326


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 148 LGGEISLPRSPSSANLYPGSGRLSTWESPWMH 243
           LGGE       ++A     S R S W+S W++
Sbjct: 337 LGGEDLFRTMANAAPGNSASNRHSAWQSHWLN 368


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 166 LPRSPSSANLYPGSGRLSTWESPWM-HP*HSAHT*KQSATVPHSFS 300
           L +SP  AN Y  S  LS  +   + HP  +AH+   S  +PH+ +
Sbjct: 95  LEKSPLLANGYNHSPHLSHMQFMQLPHP-AAAHSALLSPAMPHNLT 139


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 272 SPQPCRIHSRQTLSHD 319
           SP P  +HS  T+ +D
Sbjct: 400 SPLPSSVHSHSTIGND 415


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/32 (25%), Positives = 13/32 (40%)
 Frame = -3

Query: 338 HFTPLTDHGIESAENECGTVADCFYVWAECHG 243
           +F    ++   + EN        FY W + HG
Sbjct: 145 NFQQYDNNNFSAEENSVSEPPANFYPWMKAHG 176


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/32 (25%), Positives = 13/32 (40%)
 Frame = -3

Query: 338 HFTPLTDHGIESAENECGTVADCFYVWAECHG 243
           +F    ++   + EN        FY W + HG
Sbjct: 145 NFQQYDNNNFSAEENSVSEPPANFYPWMKAHG 176


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/32 (25%), Positives = 13/32 (40%)
 Frame = -3

Query: 338 HFTPLTDHGIESAENECGTVADCFYVWAECHG 243
           +F    ++   + EN        FY W + HG
Sbjct: 145 NFQQYDNNNFSAEENSVSEPPANFYPWMKAHG 176


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,287
Number of Sequences: 336
Number of extensions: 3294
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)