Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0746
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    29   0.70 
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    25   6.5  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   6.5  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   8.6  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   8.6  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    25   8.6  

>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -1

Query: 304 LPRMNAARLRTVFMCGRNVMDASRVTPRYLTFLTQG--IGWPKRVIGGVIFLLLMREEIS 131
           LP   A  + T+ +  +    +++ T + ++F+T G  IGWP      + F+LL   ++ 
Sbjct: 146 LPSSFAMNMVTLALSAQLSPPSTKRTVKVVSFITIGAVIGWPFSAALSIPFILLELVDLK 205

Query: 130 GEF 122
           G F
Sbjct: 206 GRF 208


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = -3

Query: 440 GVYVCAGRVSEHHTRVSHDGPYASFVKCHLVPKGHFTPLTDHGIESAENECGTVADCFYV 261
           G+Y+ + +      R+ +DG    F    ++ +GH   L D  + SA  +  TV    Y 
Sbjct: 225 GIYLYSNQRGCDGGRLYYDGSSMIFANGKMLAQGHQFSLKDVEVISATVDVDTVRS--YR 282

Query: 260 WAECHGCIQG 231
           +   HG IQG
Sbjct: 283 FQPSHG-IQG 291


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 312 PMICKRSKMSLRNKVTLYK 368
           P ICK ++++L+N +TL K
Sbjct: 63  PTICKGNEIALKNNITLEK 81


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 389 HDGPYASFVKCHLVPKGHFTPLTDHGIESAENECG 285
           +D P   +V  H    G F P T++G   AEN CG
Sbjct: 246 YDDPNVLYVSLHRYENGRFYPGTNYG--CAEN-CG 277


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
            Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 289  AARLRTVFMCGRNVMDASRVTPRYLTF 209
            A  LR +++C  N+  A +++ +YL F
Sbjct: 980  AYNLRLIYICSGNIKLAFQISSKYLIF 1006


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +3

Query: 501 NVDLHDDLGLESIQKYMKSASERYFDKAMRHDN 599
           N++LH D    ++  +++ A + Y+   + H N
Sbjct: 288 NIELHTDYAPHAVYNFVQLAKQGYYRNTIFHRN 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,286
Number of Sequences: 5004
Number of extensions: 51213
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)