Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0746
         (607 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949     29   2.2  
10_08_0620 - 19321612-19323237                                         28   5.0  
08_02_0191 + 14041201-14043894,14044354-14044632                       28   6.6  
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    28   6.6  
04_01_0095 - 991086-991487,992745-992903                               28   6.6  
12_01_1064 - 10978039-10978190,10978731-10978865,10979217-109796...    27   8.7  
02_02_0530 - 11222463-11222765,11223075-11223176,11223298-112236...    27   8.7  

>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
          Length = 550

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/31 (32%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
 Frame = +2

Query: 41  VSPLTVVPKMAHRHQPGEKHSSV-ISKGKLT 130
           ++P+++V ++ +RH  GEK++ + + KG++T
Sbjct: 482 LNPISIVTELRNRHAKGEKNAGINVRKGQIT 512


>10_08_0620 - 19321612-19323237
          Length = 541

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/31 (32%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +2

Query: 41  VSPLTVVPKMAHRHQPGEKHSSV-ISKGKLT 130
           + P++ V ++ +RH  GEK++ + + KG++T
Sbjct: 473 LDPISTVTELRNRHAKGEKNAGINVRKGRIT 503


>08_02_0191 + 14041201-14043894,14044354-14044632
          Length = 990

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 82  STRRKAQQCYFKGETHRLF-PPALGGEISLPRSPSSANLYPGSGRLSTWESPWMH 243
           ST      C+  G   R+  PP     +++P    S  +Y GS R S W  PW+H
Sbjct: 364 STLEVPYHCFVLGSVCRVSSPPVPLWRVAVPLY--SDQVYSGS-RPSPWPDPWLH 415


>04_03_0496 +
           16549333-16549465,16549620-16550020,16550412-16550880,
           16552038-16552076,16553151-16553272,16553531-16553677,
           16554097-16554186,16554274-16554398,16554567-16554772,
           16554951-16555075,16555528-16555722,16556295-16556337,
           16556762-16557267,16558198-16558570,16559772-16560062,
           16560132-16561101,16561196-16561892,16562378-16562658,
           16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
 Frame = -3

Query: 383 GPYASFVKCHLVPKGHFTP---LTDHGIESAENECGTVADCFYVWAECHGCIQGDSQVLN 213
           G YA  V C      HF     LTD    S ++ C   A   Y+   C G  +  SQ L 
Sbjct: 416 GQYAHSVGCFDEAAFHFLEAARLTDS--RSMQSMCQVYASVSYI---CMGDAESTSQALE 470

Query: 212 LPDPGYR 192
           L  P YR
Sbjct: 471 LVGPAYR 477


>04_01_0095 - 991086-991487,992745-992903
          Length = 186

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = -1

Query: 265 MCGRNVMDASRVTP---RYLTFLTQGIGWPKRVIGGV 164
           +CG  V+ A+  TP      T   Q +GWP   +GGV
Sbjct: 10  LCGMTVVAATSSTPWPSAVATGFGQSLGWPDPRVGGV 46


>12_01_1064 -
           10978039-10978190,10978731-10978865,10979217-10979605,
           10979669-10979892,10980011-10980172,10980256-10980906,
           10981583-10981804
          Length = 644

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 248 DIPPTHKNSPQPCRI 292
           DI PT+  +PQPCRI
Sbjct: 474 DISPTNSPAPQPCRI 488


>02_02_0530 -
           11222463-11222765,11223075-11223176,11223298-11223622,
           11224072-11224106
          Length = 254

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 389 HDGPYASFVKCHLVPKGHFTPLTDHGIESAENECGTVAD 273
           HD    + VKC    +GH   L  HG E  E++     D
Sbjct: 154 HDQDIVNAVKCVRSTRGHLDDLRRHGWEKLESDVYNFCD 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,409,627
Number of Sequences: 37544
Number of extensions: 397595
Number of successful extensions: 1055
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)