Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0746
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    44   8e-05
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    42   3e-04
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    39   0.003
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    35   0.052
U58755-13|AAB00702.1|  348|Caenorhabditis elegans Collagen prote...    29   2.6  
AF039044-12|AAG24130.2|  405|Caenorhabditis elegans Hypothetical...    28   4.5  
Z71178-2|CAA94875.1|  297|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF099925-12|AAC69509.1|  257|Caenorhabditis elegans Hypothetical...    27   7.9  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 28/95 (29%), Positives = 46/95 (48%)
 Frame = +3

Query: 186 GQPIPWVRKVKYLGVTLDASMTFRPHIKTVRNRAAFILGRLYPMICKRSKMSLRNKVTLY 365
           G PI      + LG  +   + F  H +   N A F L  ++    K S  + +  + LY
Sbjct: 168 GYPIERKAITRDLGFLISEKLDFSDHWRKCINLAKFQLANMFN---KYSTSNKKLMILLY 224

Query: 366 KTCIRPIMTYASVVFAHAARTHIDTLQSLQSRFCR 470
           KT IRP + Y +VV +   ++   T++S+Q+ F R
Sbjct: 225 KTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 27/95 (28%), Positives = 44/95 (46%)
 Frame = +3

Query: 186 GQPIPWVRKVKYLGVTLDASMTFRPHIKTVRNRAAFILGRLYPMICKRSKMSLRNKVTLY 365
           G PI      + LG  +   + F  H K   N A F L  ++      +K  +   + LY
Sbjct: 138 GYPIERKTITRDLGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---ILLY 194

Query: 366 KTCIRPIMTYASVVFAHAARTHIDTLQSLQSRFCR 470
           KT IRP + Y +VV +   ++    ++S+Q+ F R
Sbjct: 195 KTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +3

Query: 222 LGVTLDASMTFRPHIKTVRNRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPIMTYAS 401
           LG+  D+ +TF+PHIK +    +  L R   ++     +       L+KT I P++ Y S
Sbjct: 198 LGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKTYILPLIEYGS 254

Query: 402 VVFAHAARTHIDTL 443
            V++    + + TL
Sbjct: 255 AVYSPKPSSSLSTL 268


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 34.7 bits (76), Expect = 0.052
 Identities = 25/76 (32%), Positives = 35/76 (46%)
 Frame = +3

Query: 186  GQPIPWVRKVKYLGVTLDASMTFRPHIKTVRNRAAFILGRLYPMICKRSKMSLRNKVTLY 365
            G PI     V+ LG+  D  + F  HI  V   +   + R   ++   S  S +    LY
Sbjct: 967  GVPITPSSTVRDLGLITDCKLKFEHHIVKV---SCLAMLRSKQILKAFSSNSPKFYAHLY 1023

Query: 366  KTCIRPIMTYASVVFA 413
            KT + PIM Y S V+A
Sbjct: 1024 KTYVAPIMNYCSEVYA 1039


>U58755-13|AAB00702.1|  348|Caenorhabditis elegans Collagen protein
           113 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 500 PHEPRSPDG*PAKAGL*GLEGVYVCAGRVSEH 405
           P+ PR P G P + G  G EG     GR+ EH
Sbjct: 153 PNGPRGPTGPPGETGPSGPEGPPGNPGRIGEH 184


>AF039044-12|AAG24130.2|  405|Caenorhabditis elegans Hypothetical
           protein F48G7.11 protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +3

Query: 282 RAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPIMTYASVVFAHAARTHIDTLQSLQSR 461
           RA     +   M+C+R   SL++++   K C R  M Y + +  +  +T  D + S  SR
Sbjct: 37  RAVMRSAKSQDMVCERESCSLKDRIQCCKIC-RLKMCYDAGMDPNKFQTGRDLISS-SSR 94

Query: 462 FCRL-AVGAPWFVRN 503
              L +VG+P  + N
Sbjct: 95  SSNLSSVGSPQSLAN 109


>Z71178-2|CAA94875.1|  297|Caenorhabditis elegans Hypothetical
           protein B0024.2 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 209 PDPGYRLAEEGDRGSDISPPNAGG 138
           P PG R  + G+RGSD  P   GG
Sbjct: 249 PGPGGRPGQPGNRGSDGHPGTPGG 272


>AF099925-12|AAC69509.1|  257|Caenorhabditis elegans Hypothetical
           protein K01A2.10 protein.
          Length = 257

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 127 HRLFPPALGGEISLPRSPSSANLYPGSGRLS 219
           HR+FPP   G +    S S A  YPG+ R+S
Sbjct: 215 HRIFPPVSSGLL----SASVAVTYPGNSRIS 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,114,778
Number of Sequences: 27780
Number of extensions: 309936
Number of successful extensions: 804
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)