Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0746
(607 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32170.1 68415.m03932 expressed protein ;supported by cDNA GI... 32 0.34
At5g44300.1 68418.m05422 dormancy/auxin associated family protei... 29 2.4
At2g38090.1 68415.m04676 myb family transcription factor contain... 29 2.4
At3g10680.1 68416.m01284 heat shock protein-related contains wea... 29 3.2
At1g04090.1 68414.m00398 expressed protein 28 4.2
At5g47350.1 68418.m05836 palmitoyl protein thioesterase family p... 28 5.5
At2g45480.1 68415.m05656 expressed protein 28 5.5
At1g15770.1 68414.m01892 expressed protein 28 5.5
At4g19160.3 68417.m02827 expressed protein 27 9.6
At4g19160.2 68417.m02826 expressed protein 27 9.6
At4g19160.1 68417.m02828 expressed protein 27 9.6
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 27 9.6
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 27 9.6
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 27 9.6
At1g70700.1 68414.m08150 expressed protein 27 9.6
>At2g32170.1 68415.m03932 expressed protein ;supported by cDNA
GI:20259498
Length = 504
Score = 31.9 bits (69), Expect = 0.34
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -3
Query: 482 PDG*PAKAGL*GLEGVYVCAGRVSEHHTRVSHDGPYASFVKCHLVPKGH 336
PD PA AG+ EG +C G E + SH G + + V C + H
Sbjct: 361 PDIHPASAGI--TEGFSMCGGDFVEVYNESSHAGMWDAVVTCFFIDTAH 407
>At5g44300.1 68418.m05422 dormancy/auxin associated family protein
contains Pfam profile: PF05564 dormancy/auxin associated
protein
Length = 114
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 145 ALGGEISLPRSPSSANLYPGSGR-LSTWESPWMHP*HSAHT*KQSATV 285
++ G +SLP SP++ + PGSGR + W S + HP + T + A V
Sbjct: 43 SVAGSVSLPASPATP-VTPGSGRKVDVWRSVF-HPASNVTTREIGANV 88
>At2g38090.1 68415.m04676 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 298
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 230 DSQVLNLPD-PGYRLAEEGDRGSDISPPNAGGNKR 129
D +N+PD P A+ + SPP+ GGN+R
Sbjct: 204 DITTVNIPDSPDAAAADNATANAPCSPPSVGGNQR 238
>At3g10680.1 68416.m01284 heat shock protein-related contains weak
similarity to Pfam profile PF00011: Hsp20/alpha
crystallin family
Length = 490
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -3
Query: 257 AECHGCIQGDSQVLNLPDPGYRLAEEGDRGSDISPPNAGGNK 132
A+ G ++ +++V+ P+ G L +EG + SD+ PP A G +
Sbjct: 410 AKDRGDLKDNAEVVE-PETGPLLVKEGQKKSDMDPPLAVGGR 450
>At1g04090.1 68414.m00398 expressed protein
Length = 572
Score = 28.3 bits (60), Expect = 4.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 308 ESAENECGTVADCFYVW 258
+SAENEC + ++C Y W
Sbjct: 135 DSAENECSSKSECGYFW 151
>At5g47350.1 68418.m05836 palmitoyl protein thioesterase family
protein
Length = 316
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = -3
Query: 425 AGRVSEHHTRVSHDGPYASFVKCHLVPKGHFTPLTDHGIESAENECGTVADCFYV 261
+G + + + + PY+ FV+ +L P G+F ++ +N G + DC Y+
Sbjct: 145 SGLICDIANGIGKENPYSDFVQDNLAPSGYF--------KNPKNVTGYLKDCQYL 191
>At2g45480.1 68415.m05656 expressed protein
Length = 429
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Frame = +3
Query: 393 YASVVFAHAARTHIDTLQSLQSRFCRLAVGAPW--------FVRNVDLHDDLGLESIQKY 548
++S + ++ THIDTL++ +R CR G W F + + H G + +K
Sbjct: 70 HSSSLLSNKGVTHIDTLETEPTR-CRRTDGKKWRCSNTVLLFEKYCERHMHRGRKRSRKL 128
Query: 549 MKSASERYFDKAMRHDN 599
++S+SE + ++DN
Sbjct: 129 VESSSE-VASSSTKYDN 144
>At1g15770.1 68414.m01892 expressed protein
Length = 332
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = -3
Query: 425 AGRVSEHHTRVSHDGPYASFVKCHLVPKGHFTPLTDHGIESAENECGTVADCF 267
AG V +R S + KCHL + T DH E+++N + CF
Sbjct: 265 AGSVPGKGSRASFGVDLVAMTKCHLQERNFMTQDGDHEKEASDNP-NAIKCCF 316
>At4g19160.3 68417.m02827 expressed protein
Length = 454
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 204 VRKVKYLGVTLDASMTFRPHIKTVRNRAAFILGRLYPMICKR 329
+R K +TLD ++ + R AF++ +Y +CKR
Sbjct: 211 LRGFKRTSITLDPENSYLHSVLNCRCSTAFLISVIYIEVCKR 252
>At4g19160.2 68417.m02826 expressed protein
Length = 453
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 204 VRKVKYLGVTLDASMTFRPHIKTVRNRAAFILGRLYPMICKR 329
+R K +TLD ++ + R AF++ +Y +CKR
Sbjct: 211 LRGFKRTSITLDPENSYLHSVLNCRCSTAFLISVIYIEVCKR 252
>At4g19160.1 68417.m02828 expressed protein
Length = 312
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 204 VRKVKYLGVTLDASMTFRPHIKTVRNRAAFILGRLYPMICKR 329
+R K +TLD ++ + R AF++ +Y +CKR
Sbjct: 70 LRGFKRTSITLDPENSYLHSVLNCRCSTAFLISVIYIEVCKR 111
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 290 CGTVADCFYVWAECHGCIQGDSQVLNL 210
C CFY WAEC Q D V NL
Sbjct: 443 CSNDFICFYDWAECRLIQQIDVTVKNL 469
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 290 CGTVADCFYVWAECHGCIQGDSQVLNL 210
C CFY WAEC Q D V NL
Sbjct: 443 CSNDFICFYDWAECRLIQQIDVTVKNL 469
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 290 CGTVADCFYVWAECHGCIQGDSQVLNL 210
C CFY WAEC Q D V NL
Sbjct: 443 CSNDFICFYDWAECRLIQQIDVTVKNL 469
>At1g70700.1 68414.m08150 expressed protein
Length = 238
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 100 QQCYFKGETHRLFPPALGGEISLPRSPSSANLYPGSG 210
++C F G P LGG + LP PS SG
Sbjct: 79 RRCQFGGAFQNATPLLLGGSVPLPTHPSLVPRVASSG 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,469,672
Number of Sequences: 28952
Number of extensions: 296523
Number of successful extensions: 754
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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