Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0744
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    28   1.1  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    25   7.9  

>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 15/19 (78%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +2

Query: 509 LPGVEHLQR-FVDLPELID 562
           L GVEHL R FV LPELID
Sbjct: 271 LYGVEHLIRLFVSLPELID 289


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 79  IAQSCTKYYTIYE*SVLLYNMVTSR 153
           I  +C  Y+T ++   LLY +VTSR
Sbjct: 220 ILTTCLSYFTEHKSVNLLYKLVTSR 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,666
Number of Sequences: 5004
Number of extensions: 34509
Number of successful extensions: 52
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)