Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0742
(563 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 45 7e-06
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 40 2e-04
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 34 0.013
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 33 0.038
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 31 0.12
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.15
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 28 1.1
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom... 27 1.9
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 27 2.5
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 27 2.5
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 27 2.5
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 27 2.5
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 3.3
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom... 26 4.4
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 26 4.4
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 4.4
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 26 4.4
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 25 5.8
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 5.8
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 5.8
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 25 5.8
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 7.7
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 7.7
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 7.7
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.7
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 45.2 bits (102), Expect = 7e-06
Identities = 33/117 (28%), Positives = 44/117 (37%), Gaps = 4/117 (3%)
Frame = +3
Query: 174 LPSDYYQPQA---SEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGS 344
L S Y P + S A + + P+ P + SY P SY+ Y S
Sbjct: 1553 LTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPS 1612
Query: 345 YGPNQGSYGQNDGSYNPNQGSYQ-TGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 512
Y P SY SY+P SY T ++ P + Y P+ P YS T P
Sbjct: 1613 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS--PTSPSYSPTSPSYSPTSPSYSPTSP 1667
Score = 43.2 bits (97), Expect = 3e-05
Identities = 31/112 (27%), Positives = 41/112 (36%), Gaps = 1/112 (0%)
Frame = +3
Query: 180 SDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQ 359
S Y P + A+ P+ P + SY P SY+ Y SY P
Sbjct: 1596 SPSYSPTSPSYSAT---SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1652
Query: 360 GSYGQNDGSYNPNQGSYQ-TGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 512
SY SY+P SY T ++ P + Y P+ P YS T P
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPSYS--PTSPSYSPTSPSYSPTSPSYSPTSP 1702
Score = 42.7 bits (96), Expect = 4e-05
Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 2/118 (1%)
Frame = +3
Query: 165 YKALPSD-YYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLG 341
YK + S Y P +S S Y + +Y+P+ SY+ Y
Sbjct: 1531 YKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP 1590
Query: 342 SYGPNQGSYGQNDGSYNPNQGSYQ-TGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 512
SY P SY SY+ SY T ++ P + Y P+ P YS T P
Sbjct: 1591 SYSPTSPSYSPTSPSYSATSPSYSPTSPSYS--PTSPSYSPTSPSYSPTSPSYSPTSP 1646
Score = 42.3 bits (95), Expect = 5e-05
Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Frame = +3
Query: 234 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQ 413
P+ P + SY P SY+ Y SY P SY SY+P SY
Sbjct: 1646 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1705
Query: 414 -TGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 512
T ++ P + Y P+ P YS T P
Sbjct: 1706 PTSPSYS--PTSPSYSPTSPSYSPTSPSYSPTSP 1737
Score = 35.9 bits (79), Expect = 0.004
Identities = 18/59 (30%), Positives = 22/59 (37%)
Frame = +3
Query: 234 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSY 410
P+ P + SY P SY+ Y SY P SY SY+P SY
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1739
Score = 35.9 bits (79), Expect = 0.004
Identities = 18/59 (30%), Positives = 22/59 (37%)
Frame = +3
Query: 234 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSY 410
P+ P + SY P SY+ Y SY P SY SY+P SY
Sbjct: 1688 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1746
Score = 33.1 bits (72), Expect = 0.029
Identities = 17/58 (29%), Positives = 21/58 (36%)
Frame = +3
Query: 234 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGS 407
P+ P + SY P SY+ Y SY P SY SY+P S
Sbjct: 1695 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1752
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 40.3 bits (90), Expect = 2e-04
Identities = 34/122 (27%), Positives = 48/122 (39%), Gaps = 3/122 (2%)
Frame = +3
Query: 111 PDPQYALKALPKDYYQQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVP 290
P P Y+ A P A P+ P AS+ +A AP P+ G Y Q Y P
Sbjct: 62 PPPSYSNSAAPATPAASASSAAPAP--APAASQNRAYGAAPQPYPPQGG--YPQQPYYYP 117
Query: 291 NQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNP---NQGSYQTGQGFTGKPLNEKYEE 461
NQ +Y Q Y Q + + G++ NP G G G ++E ++
Sbjct: 118 NQPNYYPAQPAYAQPVYAQPATSARRGRSGVLSNPMVTGLGGLLVG-GLAMHEMDEAFDR 176
Query: 462 PE 467
PE
Sbjct: 177 PE 178
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 34.3 bits (75), Expect = 0.013
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +3
Query: 186 YYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPN-QGSYNQGQGDYGQNLGSYGPNQG 362
Y P + S S P + Q QG+ PN Q S YG + P Q
Sbjct: 311 YRYPPTHLESGSSAFRLQSSPMGYQMPQFQGNMRPNMQQSQMFDPSAYGMSRRPGSPRQ- 369
Query: 363 SYGQNDGSYN-PNQGSYQTGQGFTGKPLNEKYEEPE 467
+ Q Y+ PN YQT QG G P+++++ + +
Sbjct: 370 -FDQQQRLYSQPNAMMYQTQQGRQGNPMHQQFSQQQ 404
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 32.7 bits (71), Expect = 0.038
Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
Frame = +3
Query: 144 KDYYQQTYKALPSDYY-QPQASEQQASVVAP--PNSQPREGKAYQSQGSYVPNQGSY--N 308
+D Y + S+Y QP + QA+ +AP PN + + QS G +P + ++
Sbjct: 455 QDPYSMSNGVYGSNYSAQPSTMQMQATGIAPPQPNMSMQMPMSMQSTGYQMPMENTWVDY 514
Query: 309 QGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTGKPLNEKY 455
G G + N + D + + G YQ G G P + Y
Sbjct: 515 NGMSQQGNGMQPATMNYSNSMGYDTNVPADNGYYQQGYGNVMMPPDASY 563
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 31.1 bits (67), Expect = 0.12
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +3
Query: 129 LKALPKDYYQQTYKALPS--DYYQPQASEQQASVVAPPNSQPRE---GKAYQSQGSYVPN 293
L ALP+D TY+A PS D S SV +PP S+ RE G YQ +P+
Sbjct: 32 LPALPQDRTTSTYRATPSSADAGYNAPSSTFESVRSPPESR-REGGMGSGYQRDAIPIPS 90
Query: 294 QGSYNQGQGDYGQNL 338
+ + G+ +L
Sbjct: 91 EPPFTAHVGNLSFDL 105
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 30.7 bits (66), Expect = 0.15
Identities = 22/60 (36%), Positives = 26/60 (43%)
Frame = +3
Query: 312 GQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTGKPLNEKYEEPEPTGPPRGF 491
G YG SY +YG N GSY P Q S Q PL + Y P+ PP G+
Sbjct: 94 GPSRYGYYPQSYANQSYTYGNNFGSYPPTQPSTQ--------PLPQSY--GYPSYPPAGY 143
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +3
Query: 270 SQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGS 365
S+ Y P SY YG N GSY P Q S
Sbjct: 96 SRYGYYPQ--SYANQSYTYGNNFGSYPPTQPS 125
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.9 bits (59), Expect = 1.1
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +3
Query: 156 QQTYKALP--SDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGD 323
QQ LP S+YY P A+ + A V PP + + + + N GS +Q D
Sbjct: 207 QQPNPQLPGVSNYYNPSATSKPAVNVQPPRIPTKATPSAEPSMTASANAGSISQAGPD 264
>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -3
Query: 396 LDYSCHRFDRNCLDLARSCLDFGHNRLGPDYSC 298
+D+ CH +D N D G+ GP Y C
Sbjct: 67 VDHYCHSYDHNSDDTPLGKSKVGYLSPGPGYEC 99
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 26.6 bits (56), Expect = 2.5
Identities = 29/115 (25%), Positives = 44/115 (38%), Gaps = 3/115 (2%)
Frame = +3
Query: 213 QASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYN 392
Q+ APP++ ++ Q + PN G+ + + P+ + D N
Sbjct: 35 QSDSFAPPSNNSQQN---QQSSTIAPNGGAGSVANANPADQSDGVTPSFVGSLKLDYEPN 91
Query: 393 PNQGSY-QTGQGFTGKP-LNEKYEEPE-PTGPPRGFFYSFTYPVSSIVLKSDLQG 548
P + S+ T G P LN P+G P F + PVSSI L G
Sbjct: 92 PFEHSFGSTASVGQGNPSLNRNPSLSNIPSGVPPAFARTLLPPVSSIASPDILSG 146
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.6 bits (56), Expect = 2.5
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +3
Query: 171 ALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYG 350
++ SDY +P Q S V P+S + Y+S +PN Q Q + S
Sbjct: 241 SISSDYIKPVDKSDQTSNVPSPSSSVGSLRLYRSPS--IPNDVEQPQPQSSRSRPRSSTI 298
Query: 351 PNQ 359
P Q
Sbjct: 299 PTQ 301
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 369 GQNDGSYNPNQGSYQTGQGFTGKPLNEKYEEPEPTG 476
G NDG N G G P Y EP P G
Sbjct: 838 GGNDGGGTENHRDSTVGGGILKNPKAYPYREPTPPG 873
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 26.6 bits (56), Expect = 2.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 524 DTGDWVGETVEEAPWWTGWFGL 459
D +V T E APW WFG+
Sbjct: 695 DPSKFVDRTPENAPWKPYWFGI 716
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 26.2 bits (55), Expect = 3.3
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 117 PQYALKALPKDYYQQTYKALPSDYYQPQASEQ-QASVVAPPNSQPREGKAYQSQGSYVP 290
PQ L + QQ + QPQ ++Q QAS PN++ + ++ G VP
Sbjct: 142 PQQRQFLLQQSQIQQQRQQQQQQSQQPQQTQQPQASSPTAPNTEANQQRSGSVPGRIVP 200
>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 4.4
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -1
Query: 548 SLQITLQDDTGDWVGETVEEAPWWTGWF 465
SL + +D T W + + +P+W WF
Sbjct: 230 SLLVQQEDGTFVWRTDLYKTSPYWMDWF 257
>SPCC1183.07 |||U3 snoRNP-associated protein
Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1690
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 138 LPKDYYQQTYKALPSDYYQPQAS 206
+PK Y + Y +PS Y+PQ S
Sbjct: 788 VPKAYISEEYVPVPSAVYKPQQS 810
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 4.4
Identities = 28/113 (24%), Positives = 41/113 (36%)
Frame = +3
Query: 192 QPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYG 371
QPQ S Q++ P R QSQ S N + N G G G S ++ YG
Sbjct: 764 QPQLSMQRSVSPNPLGPNRRSSSVLQSQKSTSSNTSNRNNG-GYSGSRPSSEMGHR--YG 820
Query: 372 QNDGSYNPNQGSYQTGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYPVSSIVL 530
G T + + +P N + + PR F + P+ V+
Sbjct: 821 SMSGRSMRQVSQRSTSRARSPEPTNRNSVQSKNV-DPRATFTAEGEPILGYVI 872
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 355 IKAVTVKTMAAIIQTKEATKPVKDSPESL*MKNTKSP 465
+ + V A I++ +E +PV+ SPE K T P
Sbjct: 491 LHGILVVEQAYIVEEQEVEEPVETSPEEEAEKKTDEP 527
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 276 GSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQND 380
G+ V +GSYN QG+ + + G+YG ++
Sbjct: 311 GNVVATKGSYNTFQGEAESAINNLNELLGTYGYSN 345
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 369 RNCLDLARSCLDFGHNRLGPDYSCLGLERSCLGSD 265
RN D LD +R+ PD + L L +GSD
Sbjct: 228 RNMYDFFMCLLDSRASRMTPDQALLTLHADYIGSD 262
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 105 QQPDPQYALKALPKDYYQQTYKALPSDYYQPQASEQ 212
QQP P+ A P +YY +Y+++PS P + ++
Sbjct: 97 QQPQPRLYPSA-PLNYYWPSYQSVPSAAPPPPSQQR 131
Score = 25.0 bits (52), Expect = 7.7
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 165 YKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSY 305
Y + P +YY P + + S PP SQ R S +Y PNQ +
Sbjct: 104 YPSAPLNYYWP-SYQSVPSAAPPPPSQQR--YMPDSAVAYNPNQDQF 147
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 215 LLFGCLWLVIITWKGFVGLLVI 150
LLFGCL +V + F+GL +
Sbjct: 49 LLFGCLTIVFSAFASFLGLYFV 70
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.0 bits (52), Expect = 7.7
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = -3
Query: 489 SPVVDRLVRAL----RIFHLEAFR*ILDRFGSFLGLDYSCHRFDRNCLDLA 349
SP+ + +RAL +I H++A L R SFL L +R R + LA
Sbjct: 1297 SPIFGKPLRALPFTIQIGHIDAITYCLHRSPSFLDLTDELYRLFRETIALA 1347
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 336 LGSYGPNQGSYGQNDGSYNPNQGSYQTGQ 422
LGS G N + N G+YN N Q
Sbjct: 557 LGSSGNNNNNNNSNSGNYNNNNSGNNNQQ 585
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +3
Query: 141 PKDYYQQTYKALPSDYYQPQASEQQASVVAP 233
P YY + P+D P ++ + VV+P
Sbjct: 531 PFQYYPDAFSFTPTDNNSPPSNSSSSEVVSP 561
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 25.0 bits (52), Expect = 7.7
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Frame = +3
Query: 111 PDPQYALKALPKDYYQQTYK-ALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYV 287
P + P YY T K ++PS Q Q+ASV+ N+ + ++ S Y
Sbjct: 255 PSSDSVRNSSPNQYYASTSKQSIPSQSQNLQ-PPQKASVLGTVNNYRQYQNSFISLNDYQ 313
Query: 288 PNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYN 392
Q + + + P G+Y + + SY+
Sbjct: 314 AAQSNISSPSSRFPTPYSPSVP-FGTYQEKEKSYS 347
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,145,372
Number of Sequences: 5004
Number of extensions: 43682
Number of successful extensions: 197
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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