Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0742
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             32   0.003
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               26   0.23 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.92 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   3.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   6.5  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   6.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.5  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   6.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   6.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 32.3 bits (70), Expect = 0.003
 Identities = 27/118 (22%), Positives = 42/118 (35%)
 Frame = +3

Query: 129  LKALPKDYYQQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYN 308
            L A+P D        L  D+   +  +QQ     P   Q ++ +    Q S  P Q    
Sbjct: 1476 LYAVPTDKKSACDSKLIVDHSSQKTQQQQ-----PQQQQQQQQQQQPQQQSQQPQQQQPQ 1530

Query: 309  QGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTGKPLNEKYEEPEPTGPP 482
              Q    Q        Q  YG   G     Q  Y +G   +G+  N + ++ + +G P
Sbjct: 1531 PQQQQQQQQQQQPQQQQKEYGAVSGLVVQLQRGYNSGNNRSGEQANSQQQQQQQSGEP 1588



 Score = 31.1 bits (67), Expect = 0.008
 Identities = 24/90 (26%), Positives = 30/90 (33%)
 Frame = +3

Query: 105  QQPDPQYALKALPKDYYQQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSY 284
            QQ  PQ   +   +   QQ  +       QPQ  +QQ     P   Q   G      G  
Sbjct: 1501 QQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAV---SGLV 1557

Query: 285  VPNQGSYNQGQGDYGQNLGSYGPNQGSYGQ 374
            V  Q  YN G    G+   S    Q   G+
Sbjct: 1558 VQLQRGYNSGNNRSGEQANSQQQQQQQSGE 1587



 Score = 29.9 bits (64), Expect = 0.018
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
 Frame = +3

Query: 192  QPQASEQQASVVAPP--NSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGS 365
            QPQ  +QQ     P   + QP++ +    Q      Q    Q Q +YG   G     Q  
Sbjct: 1504 QPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLVVQLQRG 1563

Query: 366  YGQNDGSYNPNQGSYQTGQGFTGKPL 443
            Y   +        S Q  Q  +G+P+
Sbjct: 1564 YNSGNNRSGEQANSQQQQQQQSGEPV 1589


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 243 QPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQG 362
           +P +G   Q QG   P +    +G+G     +G+YGP +G
Sbjct: 172 EPGKGLGKQLQGISTPVEAHLRKGRG----AIGAYGPEKG 207


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 264  YQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQ 374
            Y    +  P +  Y    G YG     YG ++GS G+
Sbjct: 1807 YDDPANCAPEEDQYGSQYGQYGAPYDHYG-SRGSVGR 1842


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +3

Query: 156  QQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAY 266
            +  Y ++ SDY   + +  +     PP   P  G+AY
Sbjct: 1332 EHIYSSIDSDYSTLERTAWRQQQPPPPPPPPSSGQAY 1368


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 17/68 (25%), Positives = 23/68 (33%)
 Frame = +3

Query: 324  YGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTGKPLNEKYEEPEPTGPPRGFFYSF 503
            YG   G  G    S  Q  G   P  G   +GQ   G      Y +P+         Y  
Sbjct: 896  YGMQRGQSGGQTWSNSQVQGVAVPGSGIVASGQQHAG-GWQSIYAQPQTVQDQIVSEYYQ 954

Query: 504  TYPVSSIV 527
              P+S ++
Sbjct: 955  NKPISEVI 962


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 2   CRNSARGTSRRGSRCEGCTYCSRKSMGRSCCRCC 103
           C + A G       CEGC    R+S+ ++    C
Sbjct: 190 CGDRASGYHYNALTCEGCKGFFRRSITKNAVYQC 223


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 518 GDWVGETVEEAPWWTGW 468
           GD + E   + PW+ GW
Sbjct: 198 GDNMLEPSPKTPWYKGW 214


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 518 GDWVGETVEEAPWWTGW 468
           GD + E   + PW+ GW
Sbjct: 125 GDNMLEVSSKMPWFKGW 141


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 279 SYVPNQG-SYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQ 401
           SY    G SY +G+G   QN  +   + G    N G+ N ++
Sbjct: 18  SYFDEGGRSYGKGRGFIIQNNNNDDWSVGKKNSNSGTINESE 59


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 518 GDWVGETVEEAPWWTGW 468
           GD + E   + PW+ GW
Sbjct: 141 GDNMLEVSSKMPWFKGW 157


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 518 GDWVGETVEEAPWWTGW 468
           GD + E   + PW+ GW
Sbjct: 198 GDNMLEVSSKMPWFKGW 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,676
Number of Sequences: 438
Number of extensions: 3571
Number of successful extensions: 19
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)