Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0742
(563 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 41 5e-04
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi... 41 5e-04
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 41 7e-04
At5g44780.1 68418.m05488 expressed protein low similarity to SP|... 40 0.001
At1g44085.1 68414.m05090 glycine-rich protein similar to glycine... 39 0.002
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 38 0.004
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 37 0.008
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 37 0.011
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 36 0.014
At2g38410.1 68415.m04718 VHS domain-containing protein / GAT dom... 36 0.014
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 36 0.019
At3g07560.1 68416.m00903 glycine-rich protein 36 0.025
At2g05440.2 68415.m00575 glycine-rich protein 36 0.025
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 36 0.025
At1g52000.1 68414.m05866 jacalin lectin family protein similar t... 36 0.025
At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA) iden... 35 0.043
At3g29033.1 68416.m03629 glycine-rich protein 35 0.043
At1g33680.1 68414.m04166 KH domain-containing protein similar to... 35 0.043
At4g32760.1 68417.m04661 VHS domain-containing protein / GAT dom... 33 0.100
At2g05440.1 68415.m00574 glycine-rich protein 33 0.100
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 33 0.13
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 33 0.13
At1g32150.1 68414.m03955 bZIP transcription factor family protei... 33 0.13
At4g24680.1 68417.m03533 expressed protein 33 0.17
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 33 0.17
At4g20020.2 68417.m02930 expressed protein 32 0.30
At4g20020.1 68417.m02931 expressed protein 32 0.30
At1g09070.1 68414.m01012 C2 domain-containing protein / src2-lik... 32 0.30
At2g25970.1 68415.m03117 KH domain-containing protein 31 0.40
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 31 0.53
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ... 31 0.53
At2g05540.1 68415.m00586 glycine-rich protein 31 0.53
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 31 0.70
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 30 0.93
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 30 0.93
At5g04170.1 68418.m00405 calcium-binding EF hand family protein ... 30 0.93
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 30 0.93
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 30 0.93
At3g53340.1 68416.m05885 CCAAT-box binding transcription factor,... 30 0.93
At1g51920.1 68414.m05853 expressed protein 30 0.93
At5g61660.1 68418.m07736 glycine-rich protein 30 1.2
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 30 1.2
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 30 1.2
At1g55170.1 68414.m06301 expressed protein 30 1.2
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 30 1.2
At1g29380.1 68414.m03592 hypothetical protein 30 1.2
At3g63180.1 68416.m07097 expressed protein 29 1.6
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 1.6
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 29 1.6
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 29 1.6
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 29 1.6
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 29 1.6
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 29 1.6
At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK... 29 2.1
At4g12610.1 68417.m01987 transcription initiation factor IIF alp... 29 2.1
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 29 2.1
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 29 2.1
At3g01600.1 68416.m00091 no apical meristem (NAM) family protein... 29 2.1
At4g27550.1 68417.m03958 alpha, alpha-trehalose-phosphate syntha... 29 2.8
At2g05530.1 68415.m00585 glycine-rich protein 29 2.8
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 28 3.7
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 28 3.7
At5g19400.1 68418.m02312 expressed protein 28 3.7
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r... 28 3.7
At4g08130.1 68417.m01337 hypothetical protein 28 3.7
At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein ... 28 3.7
At1g61070.1 68414.m06876 plant defensin-fusion protein, putative... 28 3.7
At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK... 28 5.0
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 28 5.0
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 28 5.0
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 28 5.0
At4g17890.1 68417.m02666 human Rev interacting-like family prote... 28 5.0
At2g38470.1 68415.m04725 WRKY family transcription factor contai... 28 5.0
At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger) fa... 28 5.0
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 28 5.0
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ... 28 5.0
At1g15130.1 68414.m01807 hydroxyproline-rich glycoprotein family... 28 5.0
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat... 28 5.0
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ... 27 6.5
At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, p... 27 6.5
At4g28520.3 68417.m04081 12S seed storage protein, putative / cr... 27 6.5
At4g28520.2 68417.m04079 12S seed storage protein, putative / cr... 27 6.5
At4g28520.1 68417.m04080 12S seed storage protein, putative / cr... 27 6.5
At4g19590.1 68417.m02879 DNAJ heat shock N-terminal domain-conta... 27 6.5
At2g28700.1 68415.m03488 MADS-box protein-related contains INTER... 27 6.5
At1g67890.1 68414.m07752 protein kinase family protein contains ... 27 6.5
At1g53260.1 68414.m06035 hypothetical protein low similarity to ... 27 6.5
At1g22620.1 68414.m02824 phosphoinositide phosphatase family pro... 27 6.5
At1g19220.1 68414.m02392 transcriptional factor B3 family protei... 27 6.5
At4g39680.1 68417.m05614 SAP domain-containing protein contains ... 27 8.7
At4g34400.1 68417.m04886 transcriptional factor B3 family protei... 27 8.7
At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing pro... 27 8.7
At3g10300.3 68416.m01236 calcium-binding EF hand family protein ... 27 8.7
At3g10300.2 68416.m01235 calcium-binding EF hand family protein ... 27 8.7
At3g10300.1 68416.m01234 calcium-binding EF hand family protein ... 27 8.7
At1g62240.1 68414.m07021 expressed protein 27 8.7
At1g60390.1 68414.m06799 BURP domain-containing protein / polyga... 27 8.7
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/82 (26%), Positives = 29/82 (35%)
Frame = +3
Query: 234 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQ 413
P+ P + SY P +Y+ Y SY P SYG SYNP Y
Sbjct: 1676 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYS 1735
Query: 414 TGQGFTGKPLNEKYEEPEPTGP 479
++ P N + P P
Sbjct: 1736 PSIAYS--PSNARLSPASPYSP 1755
Score = 39.9 bits (89), Expect = 0.001
Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Frame = +3
Query: 219 SVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPN 398
S +P S G + S G Y P +Y+ Y +Y P SY SY+P
Sbjct: 1553 SPTSPGYSPTSPGYSPTSPG-YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT 1611
Query: 399 QGSYQ-TGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYPVSS 521
SY T ++ P + Y P+ P YS T P S
Sbjct: 1612 SPSYSPTSPSYS--PTSPSYSPTSPSYSPTSPAYSPTSPAYS 1651
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/94 (27%), Positives = 34/94 (36%), Gaps = 1/94 (1%)
Frame = +3
Query: 234 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQ 413
P P + SY P SY+ Y SY P SY SY+P +Y
Sbjct: 1585 PGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1644
Query: 414 -TGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 512
T ++ P + Y P+ P YS T P
Sbjct: 1645 PTSPAYS--PTSPAYSPTSPSYSPTSPSYSPTSP 1676
Score = 39.1 bits (87), Expect = 0.002
Identities = 26/94 (27%), Positives = 32/94 (34%), Gaps = 1/94 (1%)
Frame = +3
Query: 234 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQ 413
P P S Y P +Y+ Y SY P SY SY+P SY
Sbjct: 1571 PGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1630
Query: 414 -TGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 512
T ++ P + Y P P YS T P
Sbjct: 1631 PTSPSYS--PTSPAYSPTSPAYSPTSPAYSPTSP 1662
Score = 38.3 bits (85), Expect = 0.004
Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 1/97 (1%)
Frame = +3
Query: 234 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQ 413
P P + +Y P+ Y+ Y SY P SY SY+P SY
Sbjct: 1564 PGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1623
Query: 414 -TGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYPVSS 521
T ++ P + Y P P YS T P S
Sbjct: 1624 PTSPSYS--PTSPSYSPTSPAYSPTSPAYSPTSPAYS 1658
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/94 (26%), Positives = 34/94 (36%), Gaps = 1/94 (1%)
Frame = +3
Query: 234 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQ 413
P+ P + SY P +Y+ Y +Y P SY SY+P SY
Sbjct: 1620 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1679
Query: 414 -TGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 512
T ++ P + Y P P YS T P
Sbjct: 1680 PTSPSYS--PTSPSYSPTSPAYSPTSPGYSPTSP 1711
Score = 37.1 bits (82), Expect = 0.008
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 1/94 (1%)
Frame = +3
Query: 234 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQ 413
P+ P + +Y P +Y+ Y SY P SY SY+P SY
Sbjct: 1634 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1693
Query: 414 -TGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 512
T ++ P + Y P+ P Y T P
Sbjct: 1694 PTSPAYS--PTSPGYSPTSPSYSPTSPSYGPTSP 1725
Score = 35.5 bits (78), Expect = 0.025
Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 1/109 (0%)
Frame = +3
Query: 189 YQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSY 368
+ P S + P P + Y P Y+ Y +Y P+ Y
Sbjct: 1528 FSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1587
Query: 369 GQNDGSYNPNQGSYQ-TGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 512
+Y+P SY T ++ P + Y P+ P YS T P
Sbjct: 1588 SPTSPAYSPTSPSYSPTSPSYS--PTSPSYSPTSPSYSPTSPSYSPTSP 1634
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/59 (28%), Positives = 20/59 (33%)
Frame = +3
Query: 234 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSY 410
P+ P + SY P SY+ Y Y P SY SY P SY
Sbjct: 1669 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSY 1727
Score = 33.1 bits (72), Expect = 0.13
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +3
Query: 180 SDYYQPQASEQQASVV-APPNSQPREGKAYQ-SQGSYVPNQGSYNQGQGDYGQNLGSYGP 353
S Y PQ+++ S+ +P N++ Y + +Y P SY+ Y + +Y P
Sbjct: 1724 SPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSP 1783
Query: 354 NQGSYGQNDGSYNPNQGSYQTGQGFT 431
+ Y+P+ G T G++
Sbjct: 1784 SSPYSSGASPDYSPSAGYSPTLPGYS 1809
Score = 31.1 bits (67), Expect = 0.53
Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 11/103 (10%)
Frame = +3
Query: 150 YYQQTYKALPSDYYQPQ-ASEQQASVVAP--PNSQPREGKAYQSQGSYVPNQGSYNQGQG 320
Y Q+ K PS Y P A AS +P PN P + SY P+ +Y+
Sbjct: 1727 YNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSP 1786
Query: 321 -------DYGQNLGSYGPNQGSYGQND-GSYNPNQGSYQTGQG 425
DY + G Y P Y + G Y P++G + G
Sbjct: 1787 YSSGASPDYSPSAG-YSPTLPGYSPSSTGQYTPHEGDKKDKTG 1828
>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 579
Score = 41.1 bits (92), Expect = 5e-04
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 3/108 (2%)
Frame = +3
Query: 111 PDPQYALKALPKDYYQQTYKALPSDYYQPQASEQQASVVAPPNSQ--PREGKAYQSQ-GS 281
P + A DY+Q PS + +P + S +Q P+ + +Q G
Sbjct: 45 PIKHLSTSAAANDYHQNPQSGSPSQHQRPYPPQSFDSQNQTNTNQRVPQSPNQWSTQHGG 104
Query: 282 YVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQG 425
+P G N G G P QG G +NP G ++ G
Sbjct: 105 QIPQYGGQNPQHGGQRPPYGGQNPQQGGQMSQYGGHNPQHGGHRPQYG 152
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 40.7 bits (91), Expect = 7e-04
Identities = 24/77 (31%), Positives = 30/77 (38%)
Frame = +3
Query: 204 SEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDG 383
SE + +V G Y + G Y G+Y G G+Y G+Y G Y G
Sbjct: 31 SESKETVKPDQRGYGDNGGNYNNGGGYQGGGGNYQGGGGNYQGGGGNYQGGGGRYQGGGG 90
Query: 384 SYNPNQGSYQTGQGFTG 434
Y G YQ G G G
Sbjct: 91 RYQGGGGRYQGGGGRQG 107
>At5g44780.1 68418.m05488 expressed protein low similarity to
SP|Q38732 DAG protein, chloroplast precursor
{Antirrhinum majus}
Length = 723
Score = 39.9 bits (89), Expect = 0.001
Identities = 39/117 (33%), Positives = 51/117 (43%), Gaps = 21/117 (17%)
Frame = +3
Query: 153 YQQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQS---QGSYVPN-QGSYNQ-GQ 317
Y Q A Y+Q Q ++ +P N Y QG+ V Q YNQ GQ
Sbjct: 358 YNQGQGAQTPPYHQGQGAQTPPYQESPNNYGQGAFVQYNQGPPQGNVVQTTQEKYNQMGQ 417
Query: 318 GDYG-QNLGSYGPNQGS------YGQNDG---------SYNPNQGSYQTGQGFTGKP 440
G+Y Q+ G+Y P QG+ YGQ G +YN QG+ GQG G+P
Sbjct: 418 GNYAPQSGGNYSPAQGAGSPRFGYGQGQGGQLLSPYRGNYNQGQGTPLPGQGQEGQP 474
Score = 34.3 bits (75), Expect = 0.057
Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Frame = +3
Query: 153 YQQTYKALPSDYYQPQASEQQASV---VAPPNSQPREGKAYQSQGSYVPN-QGSYNQGQG 320
++Q+ LP Q Q S++ S V P G+ Q+Q S +P+ QG+ QGQ
Sbjct: 288 FKQSQGTLPVRKGQTQISDEIPSFQGNVKQRQEMPIHGQG-QAQRSQMPSSQGTLRQGQA 346
Query: 321 DYGQNLGSYGP-NQGSYGQNDGSYNPNQGSYQTGQGFTGKPLNE 449
GS P NQ Y Q G+ P Y GQG P E
Sbjct: 347 Q-----GSQRPSNQVGYNQGQGAQTP---PYHQGQGAQTPPYQE 382
Score = 32.3 bits (70), Expect = 0.23
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Frame = +3
Query: 156 QQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYV--PNQGSYNQGQGDYG 329
Q+ Y + Y PQ+ + A PR G Q QG + P +G+YNQGQG
Sbjct: 409 QEKYNQMGQGNYAPQSGGNYSP--AQGAGSPRFGYG-QGQGGQLLSPYRGNYNQGQGTPL 465
Query: 330 QNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTGKPLNEKYEEPEPTGPPRGFF 494
G G G + G P + Q G G+ Y + GPP+G F
Sbjct: 466 PGQGQEGQPSYQMGFSQGLGAPVPPN-QVIPGNYGQWAFVNYNQ----GPPQGNF 515
Score = 27.9 bits (59), Expect = 5.0
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = +3
Query: 192 QPQASEQQASVVAPPNSQPREGKAYQSQGSY-VPNQGSYNQGQGDYGQNLGSYGPNQG-- 362
+ + +++A ++ P + + Q QGS +P+Q S + QG G G G
Sbjct: 199 ESKPEQEEAEIILTPPDEGKTSGQVQGQGSLTLPDQRSVKERQGTLALVQGQ-GQRSGMS 257
Query: 363 --SYGQNDGSYNPNQGSYQT-GQG 425
GQ +G G +Q+ GQG
Sbjct: 258 ILGQGQGEGRRMSIPGQWQSRGQG 281
>At1g44085.1 68414.m05090 glycine-rich protein similar to
glycine-rich protein GI:18147 from [Chenopodium rubrum]
Length = 90
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/66 (34%), Positives = 30/66 (45%)
Frame = +3
Query: 252 EGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFT 431
+G S G N G Y Q Y + G Y NQ + G N G Y+P QG+ G G
Sbjct: 17 QGNPADSGGIGNVNSGGYQVNQNSYKNSGGYYQGNQATNG-NSGGYSPYQGTQGLGVGGG 75
Query: 432 GKPLNE 449
G+ +E
Sbjct: 76 GQRYSE 81
Score = 32.7 bits (71), Expect = 0.17
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +3
Query: 264 YQ-SQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGF 428
YQ +Q SY N G Y QG N G Y P QG+ G G + GF
Sbjct: 34 YQVNQNSY-KNSGGYYQGNQATNGNSGGYSPYQGTQGLGVGGGGQRYSEILSNNGF 88
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = +3
Query: 237 NSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDG 383
NS G YQ + N G Y+ QG G +G G N+G
Sbjct: 39 NSYKNSGGYYQGNQATNGNSGGYSPYQGTQGLGVGGGGQRYSEILSNNG 87
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = +3
Query: 255 GKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTG 434
G+ ++ +GS+ +G Y G G YG G YG G YG G Y G +G G+ G
Sbjct: 571 GRDFRREGSFGSGRGGYGGGGGGYGGG-GGYG-GGGGYG-GGGGYGGGYGGASSG-GYGG 626
Query: 435 KP 440
+P
Sbjct: 627 EP 628
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 37.1 bits (82), Expect = 0.008
Identities = 25/61 (40%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +3
Query: 255 GKAYQSQGSYVPNQGSYNQGQGD-YGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFT 431
G Y G + G Y G GD YG GSYG G YG GSY GS G G+
Sbjct: 303 GGGYNRGGYSMGGGGGYGGGPGDMYG---GSYGEPGGGYGGPSGSYGGGYGSSGIG-GYG 358
Query: 432 G 434
G
Sbjct: 359 G 359
Score = 31.5 bits (68), Expect = 0.40
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = +3
Query: 297 GSYNQGQGDYGQNLGSYGPNQGSY---GQNDGSYNPNQGSYQTGQGF 428
GSY + G YG GSYG GS G G G Y+ G G+
Sbjct: 329 GSYGEPGGGYGGPSGSYGGGYGSSGIGGYGGGMGGAGGGGYRGGGGY 375
Score = 29.5 bits (63), Expect = 1.6
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Frame = +3
Query: 276 GSYVPNQGSYNQGQGDYGQNLGSYGPN-----QGSYGQNDGSYNPNQGSYQTGQGFTGKP 440
G Y G Y G G YG +G Y G YG G YN S G G+ G P
Sbjct: 266 GGYGGEFGGY--GGGGYGGGVGPYRGEPALGYSGRYGGGGGGYNRGGYSMGGGGGYGGGP 323
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = +3
Query: 276 GSYVPNQGSYNQGQGDYGQNLGSYGPNQGSY-GQNDGSYNPNQGSY--QTGQGFTGK 437
G Y G Y G G G G YG G + G G Y G Y + G++G+
Sbjct: 242 GGYGGPGGPYKSGGGYGGGRSGGYGGYGGEFGGYGGGGYGGGVGPYRGEPALGYSGR 298
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 36.7 bits (81), Expect = 0.011
Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Frame = +3
Query: 255 GKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQND-GSYNPNQGSYQTGQGFT 431
G Y G G Y G G YG + G YG G YG N G Y N G G
Sbjct: 127 GGGYGGGGGGYGGSGGYGGGAGGYGGS-GGYGGGAGGYGGNSGGGYGGNAAGGYGGSGAG 185
Query: 432 G 434
G
Sbjct: 186 G 186
Score = 35.5 bits (78), Expect = 0.025
Identities = 25/66 (37%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Frame = +3
Query: 255 GKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGS-YGQN-----DGSYNPNQGSYQT 416
G Y G Y G Y G G YG G YG N G YG N GS G T
Sbjct: 134 GGGYGGSGGYGGGAGGYG-GSGGYGGGAGGYGGNSGGGYGGNAAGGYGGSGAGGYGGDAT 192
Query: 417 GQGFTG 434
G G G
Sbjct: 193 GHGGAG 198
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 36.3 bits (80), Expect = 0.014
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +3
Query: 225 VAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYG 350
V P N +P +AY G Y G Y G G YG G YG
Sbjct: 108 VNPANDRPSAPRAYGGGGGYSGGGGGYGGGGGGYGGGGGGYG 149
>At2g38410.1 68415.m04718 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 671
Score = 36.3 bits (80), Expect = 0.014
Identities = 23/77 (29%), Positives = 27/77 (35%)
Frame = +3
Query: 195 PQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQ 374
P+ S + ++ PP S P Q QG Y Y Q YG YG Q YG
Sbjct: 144 PRRSPDASPIITPPVSHP---PLRQPQGGYGVPPAGYGVHQAGYGVPQAGYGIPQAGYGV 200
Query: 375 NDGSYNPNQGSYQTGQG 425
Y Q Y G
Sbjct: 201 PQAGYGIPQVGYGMPSG 217
Score = 31.5 bits (68), Expect = 0.40
Identities = 32/130 (24%), Positives = 43/130 (33%), Gaps = 3/130 (2%)
Frame = +3
Query: 105 QQPDPQYALKALPKDYYQQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSY 284
QQ PQ + Y Q Y QPQ S+QQ QP++G + +
Sbjct: 484 QQQQPQQP--QAQQGYSQHQQHQQQQGYSQPQHSQQQQGYSQLQQPQPQQGYSQSQPQAQ 541
Query: 285 VPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPN---QGSYQTGQGFTGKPLNEKY 455
V Q S QN Y P + + Y P SY G+ L +
Sbjct: 542 VQMQPSTRP------QNPYEYPPPPWASTSANAYYTPRANASASYTDTSALAGRSLQQSN 595
Query: 456 EEPEPTGPPR 485
P G P+
Sbjct: 596 SFPTRAGDPQ 605
Score = 31.1 bits (67), Expect = 0.53
Identities = 28/100 (28%), Positives = 33/100 (33%), Gaps = 2/100 (2%)
Frame = +3
Query: 147 DYYQQTYKALPSDY--YQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQG 320
D +QQ + Y Y E + S V P P S+ P Q QG
Sbjct: 113 DSWQQAFGGPEGKYPQYYWAYDELRRSGVEFPRRSPDASPIITPPVSHPP----LRQPQG 168
Query: 321 DYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTGKP 440
YG YG +Q YG Y Q Y Q G P
Sbjct: 169 GYGVPPAGYGVHQAGYGVPQAGYGIPQAGYGVPQAGYGIP 208
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 35.9 bits (79), Expect = 0.019
Identities = 30/122 (24%), Positives = 41/122 (33%), Gaps = 1/122 (0%)
Frame = +3
Query: 117 PQYALKALPKDYYQQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKA-YQSQGSYVPN 293
P L LP + Q Y+ P Q + PP P ++ +Q P
Sbjct: 279 PSLQLPQLPNQFSPQQ-----EPYFPPSGQSQPPPTIQPPYQPPPPTQSLHQPPYQPPPQ 333
Query: 294 QGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTGKPLNEKYEEPEPT 473
Q Y Q Q+ Y P + Y Q SY PN G +++Y PT
Sbjct: 334 QPQYPQQPPPQLQHPSGYNPEEPPYPQQ--SYPPNPPRQPPSHPPPGSAPSQQYYNAPPT 391
Query: 474 GP 479
P
Sbjct: 392 PP 393
>At3g07560.1 68416.m00903 glycine-rich protein
Length = 304
Score = 35.5 bits (78), Expect = 0.025
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +3
Query: 168 KALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQ--GSYVPNQG-SYNQGQGDYGQNL 338
+ +P +P + S+ P ++P E + Y S G Y N G + G G YG L
Sbjct: 48 EVVPPPVNRPNTAANMNSLSRPVPARPWEQQNYGSTMGGGYGSNLGMTSGYGSGTYGSAL 107
Query: 339 GSYGPNQGSYGQNDGSYNPNQGSYQTG 419
G YG + G G GS + +G Y G
Sbjct: 108 GGYGSSYGG-GMYGGS-SMYRGGYGGG 132
Score = 30.7 bits (66), Expect = 0.70
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Frame = +3
Query: 294 QGSYNQGQGDYGQNLGSYGPN-QGSYGQNDGSYNPNQGS---YQTGQGFTGKPLNEKYEE 461
+G Y G G YG + G YG G YG G Y G+ G G G ++ +
Sbjct: 126 RGGYGGG-GLYGSS-GMYGGGAMGGYGGTMGGYGMGMGTGMGMGMGMGMGGPYGSQDPND 183
Query: 462 P--EPTGPPRGFFYSF 503
P +P PP GF+ SF
Sbjct: 184 PFNQPPSPP-GFWISF 198
>At2g05440.2 68415.m00575 glycine-rich protein
Length = 154
Score = 35.5 bits (78), Expect = 0.025
Identities = 24/68 (35%), Positives = 25/68 (36%)
Frame = +3
Query: 276 GSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTGKPLNEKY 455
G Y G Y G G YG G YG G +G G Y G Y G G G
Sbjct: 87 GHYGGGGGHYGGGGGHYGGGGGHYGGGGGGHG-GGGHYGGGGGGYGGGGGHHGGG-GHGL 144
Query: 456 EEPEPTGP 479
EP T P
Sbjct: 145 NEPVQTKP 152
Score = 35.1 bits (77), Expect = 0.033
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = +3
Query: 303 YNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTG 434
Y G G YG G YG G YG G Y G Y G G G
Sbjct: 75 YGGGGGHYGGGGGHYGGGGGHYGGGGGHYGGGGGHYGGGGGGHG 118
Score = 34.7 bits (76), Expect = 0.043
Identities = 17/46 (36%), Positives = 19/46 (41%)
Frame = +3
Query: 297 GSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTG 434
G Y G G YG G YG G YG G Y G + G + G
Sbjct: 80 GHYGGGGGHYGGGGGHYGGGGGHYGGGGGHYGGGGGGHGGGGHYGG 125
Score = 33.9 bits (74), Expect = 0.075
Identities = 20/53 (37%), Positives = 21/53 (39%)
Frame = +3
Query: 276 GSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTG 434
G Y G Y G G YG G YG G YG G + G Y G G G
Sbjct: 80 GHYGGGGGHYGGGGGHYGGGGGHYGGGGGHYGGGGGGHG-GGGHYGGGGGGYG 131
Score = 32.7 bits (71), Expect = 0.17
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = +3
Query: 291 NQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTG 434
+ G G YG G YG G YG G Y G Y G G G
Sbjct: 64 HNGGGGHGLDGYGGGGGHYGGGGGHYGGGGGHYGGGGGHYGGGGGHYG 111
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +3
Query: 201 ASEQQASVVAPPNSQPREGKAYQS-QGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQN 377
++ +Q+ +V P + + + + Y G + + G G G G N G G YG
Sbjct: 22 SAARQSGMVKPESEETVQPEGYGGGHGGHGGHGGGGGHGHG--GHN-GGGGHGLDGYGGG 78
Query: 378 DGSYNPNQGSYQTGQGFTG 434
G Y G Y G G G
Sbjct: 79 GGHYGGGGGHYGGGGGHYG 97
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 35.5 bits (78), Expect = 0.025
Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +3
Query: 270 SQGSYVPNQGSYNQGQGDYGQNLGSYGPNQ---GSYGQNDGSYNPNQGSYQTGQGFTG 434
S G Y G Y G G YG N SY N G YG N SY N G Y ++G
Sbjct: 131 SDGGYGAPAGGYGGGAGGYGGN-SSYSGNAGGGGGYGGN-SSYGGNAGGYGGNPPYSG 186
Score = 30.7 bits (66), Expect = 0.70
Identities = 20/54 (37%), Positives = 23/54 (42%)
Frame = +3
Query: 273 QGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTG 434
+GS +G G G YG + G YG G YG G Y N SY G G
Sbjct: 112 RGSGFGGRGFGGPG-GGYGASDGGYGAPAGGYGGGAGGYGGN-SSYSGNAGGGG 163
Score = 27.5 bits (58), Expect = 6.5
Identities = 23/74 (31%), Positives = 24/74 (32%), Gaps = 5/74 (6%)
Frame = +3
Query: 228 APPNSQPREGKAYQSQGSYVPNQGSYNQ--GQGDYGQNLGSYG---PNQGSYGQNDGSYN 392
AP Y SY N G G YG N G YG P G+ G Y
Sbjct: 137 APAGGYGGGAGGYGGNSSYSGNAGGGGGYGGNSSYGGNAGGYGGNPPYSGNAVGGGGGYG 196
Query: 393 PNQGSYQTGQGFTG 434
N G G G G
Sbjct: 197 SNFGG-GGGYGVAG 209
>At1g52000.1 68414.m05866 jacalin lectin family protein similar to
myrosinase binding protein [Brassica napus] GI:1711296,
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile: PF01419
jacalin-like lectin domain
Length = 730
Score = 35.5 bits (78), Expect = 0.025
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +3
Query: 216 ASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNP 395
AS V ++ G + S GS N G+ G G+ +N+G P+ G G N G+
Sbjct: 184 ASAVGNGETEKNAGGSKPSSGSAGTNPGASAGGNGETEKNVGGSKPSSGKAGTNPGANAG 243
Query: 396 NQGSYQTGQG 425
G + G
Sbjct: 244 GNGGTEKNAG 253
Score = 33.5 bits (73), Expect = 0.100
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +3
Query: 240 SQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTG 419
++ G + S GS N G+ G G+ N+G N G NDG+ N G ++
Sbjct: 248 TEKNAGGSKSSSGSARTNPGASAGGNGETVSNIGDTESNAGGSKSNDGANNGASG-IESN 306
Query: 420 QGFTG 434
G TG
Sbjct: 307 AGSTG 311
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Frame = +3
Query: 297 GSYNQGQGDYGQNLGSYGPNQGSYGQNDGSY---NPNQGSYQTGQGFTG 434
G N G G N GS G N G+ G D + N G +T G +G
Sbjct: 339 GGTNDGASGIGSNDGSTGTNPGAGGGTDSNIEGTENNVGGKETNPGASG 387
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +3
Query: 240 SQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTG 419
S+P GKA + G+ G + G + GS N G+ +G N G ++
Sbjct: 227 SKPSSGKAGTNPGANAGGNGGTEKNAGGSKSSSGSARTNPGASAGGNGETVSNIGDTESN 286
Query: 420 QG 425
G
Sbjct: 287 AG 288
>At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA)
identical to nuclear RNA binding protein GI:6492264 from
[Arabidopsis thaliana]
Length = 355
Score = 34.7 bits (76), Expect = 0.043
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Frame = +3
Query: 231 PPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSY 410
PP RE ++ +G +G +N+G+G Y ++ G+ G G Y + G + ++ SY
Sbjct: 53 PPAQAVREARSDAPRGG--GGRGGFNRGRGGYNRDDGNNG-YSGGYTKPSGEGDVSKSSY 109
Query: 411 QTGQGFTGKPLNE-KYEEPEPTGPPRGFF 494
+ +G G P + E P G RG F
Sbjct: 110 ER-RGGGGAPRGSFRGEGGGPGGGRRGGF 137
>At3g29033.1 68416.m03629 glycine-rich protein
Length = 167
Score = 34.7 bits (76), Expect = 0.043
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +3
Query: 264 YQSQGSYVPNQGSYNQG-QGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGF 428
YQ + Q Y G QG+ N G QG N G Y NQ SY+ G+
Sbjct: 87 YQGSAQFYGYQADYADGYQGNLAGNPPGSGGYQGIGNVNSGGYQVNQNSYENSCGY 142
Score = 27.9 bits (59), Expect = 5.0
Identities = 22/50 (44%), Positives = 24/50 (48%)
Frame = +3
Query: 264 YQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQ 413
YQ+ GS N S N G+G GQN PN G Y Q P QGS Q
Sbjct: 52 YQAGGSSGRNYDSPNHGRGT-GQN----SPNPGCYDQ----VTPYQGSAQ 92
>At1g33680.1 68414.m04166 KH domain-containing protein similar to
FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
sapiens]
Length = 759
Score = 34.7 bits (76), Expect = 0.043
Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 3/117 (2%)
Frame = +3
Query: 177 PSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGD---YGQNLGSY 347
P DYY Q + P P G +Y G+ Y+Q D Q+ G Y
Sbjct: 474 PYDYYGRQGGQN-------PGPVPSHGASYSQAGAQQTYGQMYDQPHYDNPPMHQSYGGY 526
Query: 348 GPNQGSYGQNDGSYNPNQGSYQTGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYPVS 518
G +Q Y G + Q S G + + + Y P P PP Y P +
Sbjct: 527 GGSQQGYPSAGGQHQMQQPSRPYGMQGSAE---QGYGPPRPAAPPGDVPYQGPTPAA 580
Score = 34.7 bits (76), Expect = 0.043
Identities = 35/115 (30%), Positives = 39/115 (33%), Gaps = 6/115 (5%)
Frame = +3
Query: 105 QQPDPQYALKALPKDYYQQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSY 284
QQ YA A + Y A PSD Y A +QP G Q+ G Y
Sbjct: 616 QQQQYGYASSAPTQQTYPSYSSAAPSDGYNGTQPPAVAPAYEQHGAQPASG-VQQTSGGY 674
Query: 285 --VPNQG---SYNQGQGDYGQNLGSYGPNQGSYGQNDGSY-NPNQGSYQTGQGFT 431
VP G SY Q YG N G G SY N +Y G T
Sbjct: 675 GQVPPTGGYSSYPSTQPAYGNTPAQSNGNYGYIGSQYPSYGGGNASAYAAPTGQT 729
>At4g32760.1 68417.m04661 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 838
Score = 33.5 bits (73), Expect = 0.100
Identities = 23/71 (32%), Positives = 33/71 (46%)
Frame = +3
Query: 159 QTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNL 338
Q +AL S Y QPQ +QQ ++A +Q ++ + Q Q +Y G Y G Q
Sbjct: 713 QPNQALGSGY-QPQQQQQQQMMMAQYYAQQQQLQQQQQQQAYGNQMGGYGYGYNQQQQGS 771
Query: 339 GSYGPNQGSYG 371
Y +Q YG
Sbjct: 772 SPY-LDQQMYG 781
Score = 27.9 bits (59), Expect = 5.0
Identities = 23/69 (33%), Positives = 28/69 (40%)
Frame = +3
Query: 234 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQ 413
PNSQ E QS G + P G Q YGQ + S +Q + P Q SY+
Sbjct: 564 PNSQAGEAGLQQSNG-FAPQVGYSQFEQPSYGQGVSSPWSSQPAQ-------QPVQPSYE 615
Query: 414 TGQGFTGKP 440
Q T P
Sbjct: 616 GAQDSTAFP 624
>At2g05440.1 68415.m00574 glycine-rich protein
Length = 127
Score = 33.5 bits (73), Expect = 0.100
Identities = 21/63 (33%), Positives = 22/63 (34%)
Frame = +3
Query: 291 NQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTGKPLNEKYEEPEP 470
+ G G YG G YG G YG G Y G Y G G G EP
Sbjct: 64 HNGGGGHGLDGYGGGGGHYGGGGGHYGGGGGHYGGGGGGYGGGGGHHGGG-GHGLNEPVQ 122
Query: 471 TGP 479
T P
Sbjct: 123 TKP 125
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +3
Query: 201 ASEQQASVVAPPNSQPREGKAYQS-QGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQN 377
++ +Q+ +V P + + + + Y G + + G G G G N G G YG
Sbjct: 22 SAARQSGMVKPESEETVQPEGYGGGHGGHGGHGGGGGHGHG--GHN-GGGGHGLDGYGGG 78
Query: 378 DGSYNPNQGSYQTGQGFTG 434
G Y G Y G G G
Sbjct: 79 GGHYGGGGGHYGGGGGHYG 97
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 276 GSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYG 371
G Y G Y G G YG G YG G +G
Sbjct: 80 GHYGGGGGHYGGGGGHYGGGGGGYGGGGGHHG 111
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 33.1 bits (72), Expect = 0.13
Identities = 22/59 (37%), Positives = 27/59 (45%)
Frame = +3
Query: 264 YQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTGKP 440
+QS G+ +P+ GS G G YG GS G G+YG GS G G T P
Sbjct: 229 HQSVGNGLPSYGSSGYGAG-YGN--GSNGAGYGAYGGYTGSAGGYGAGATAGYGATNIP 284
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Frame = +3
Query: 264 YQSQGSYVPNQGSYN----QGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQ---GSYQTGQ 422
Y S NQ +Y + G N GS G G YG +P+Q G Y GQ
Sbjct: 347 YSGSDSGYGNQAAYGVVGGRPSGGGSNNPGSGGYMGGGYGDGSWRSDPSQGYGGGYNDGQ 406
Query: 423 GFTGK 437
G G+
Sbjct: 407 GRQGQ 411
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +3
Query: 264 YQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQND-GSYNPNQGSYQTG 419
Y+ + ++ N G N+G G+ GS+G +G YG+ D Y N+G+ + G
Sbjct: 393 YRGRSTFGVNTGYRNEG----GRGRGSFGGGRGGYGRTDFNGYGNNRGNNRGG 441
>At1g32150.1 68414.m03955 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription factor
Length = 389
Score = 33.1 bits (72), Expect = 0.13
Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 3/117 (2%)
Frame = +3
Query: 111 PDPQYALKALPKDYYQQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVP 290
P YA +LP Y + A+PS +AS SV+ + +P +GK
Sbjct: 97 PGGMYAHPSLPPGSYPYSPYAMPSPNGMAEASGNTGSVI-EGDGKPSDGKEKLPIKRSKG 155
Query: 291 NQGSYNQGQG---DYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTGKPLNEK 452
+ GS N G + G+N G+ S GS + GS Q +G N K
Sbjct: 156 SLGSLNMIIGKNNEAGKNSGASANGACSKSAESGSDGSSDGSDANSQNDSGSRHNGK 212
>At4g24680.1 68417.m03533 expressed protein
Length = 1480
Score = 32.7 bits (71), Expect = 0.17
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +3
Query: 165 YKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGS 344
YK + S Y + S +Q+ S EG Y+ +G QG Y Q +G G+N G
Sbjct: 1419 YKPVGSHTYDGERSREQSK-----ESSQTEGPRYREKGQGQQRQGGYQQQRGTSGRN-GG 1472
Query: 345 YG 350
+G
Sbjct: 1473 HG 1474
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 32.7 bits (71), Expect = 0.17
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 276 GSYVPNQGSYNQGQ-GDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGF 428
GSY + G G G YG + G G GSYG + GS + G GF
Sbjct: 521 GSYGSSSGRSGGGSYGGYGGSSGRSGGGGGSYGGSGGSSSRYSGGSDRSSGF 572
>At4g20020.2 68417.m02930 expressed protein
Length = 406
Score = 31.9 bits (69), Expect = 0.30
Identities = 31/122 (25%), Positives = 41/122 (33%), Gaps = 7/122 (5%)
Frame = +3
Query: 138 LPKDYYQQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQ 317
LP Y K D Y+ + + ++PR GS P N
Sbjct: 164 LPDSYIDPQNKEYGGDKYENGVITHRPPPIQSGRARPRPRFDRSGGGSGGPQNFQRNTQY 223
Query: 318 GDYGQNLG---SYGPNQG--SYGQNDGSYNPN--QGSYQTGQGFTGKPLNEKYEEPEPTG 476
G G SYGP QG + GQ G+ P QG Y G P Y + + +
Sbjct: 224 GQQPPMQGGGGSYGPQQGYATPGQGQGTQAPPPFQGGYNQGPRSPPPPYQAGYNQGQGSP 283
Query: 477 PP 482
P
Sbjct: 284 VP 285
Score = 29.5 bits (63), Expect = 1.6
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 19/116 (16%)
Frame = +3
Query: 177 PSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVP----NQGSYNQ-GQGDY----- 326
P YQ ++ Q S V P + Q QGS VP Q SY Q G G+Y
Sbjct: 268 PPPPYQAGYNQGQGSPVPP-----YQAGYNQVQGSPVPPYQGTQSSYGQGGSGNYSQGPQ 322
Query: 327 -GQNLG---SYGP-NQGSYGQNDGSYN----PNQGSYQTGQGFTGKPLNEKYEEPE 467
G N G +Y P G++G G+ N P G+ GQG++G + P+
Sbjct: 323 GGYNQGGPRNYNPQGAGNFGPASGAGNLGPAPGAGNPGYGQGYSGPGQEQNQTFPQ 378
>At4g20020.1 68417.m02931 expressed protein
Length = 419
Score = 31.9 bits (69), Expect = 0.30
Identities = 31/122 (25%), Positives = 41/122 (33%), Gaps = 7/122 (5%)
Frame = +3
Query: 138 LPKDYYQQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQ 317
LP Y K D Y+ + + ++PR GS P N
Sbjct: 164 LPDSYIDPQNKEYGGDKYENGVITHRPPPIQSGRARPRPRFDRSGGGSGGPQNFQRNTQY 223
Query: 318 GDYGQNLG---SYGPNQG--SYGQNDGSYNPN--QGSYQTGQGFTGKPLNEKYEEPEPTG 476
G G SYGP QG + GQ G+ P QG Y G P Y + + +
Sbjct: 224 GQQPPMQGGGGSYGPQQGYATPGQGQGTQAPPPFQGGYNQGPRSPPPPYQAGYNQGQGSP 283
Query: 477 PP 482
P
Sbjct: 284 VP 285
Score = 29.5 bits (63), Expect = 1.6
Identities = 36/116 (31%), Positives = 49/116 (42%), Gaps = 19/116 (16%)
Frame = +3
Query: 177 PSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVP----NQGSYNQ-GQGDY----- 326
P YQ ++ Q S V P + Q QGS VP Q SY Q G G+Y
Sbjct: 268 PPPPYQAGYNQGQGSPVPP-----YQAGYNQVQGSPVPPYQGTQSSYGQGGSGNYSQGPQ 322
Query: 327 -GQNLG---SYGP-NQGSYGQNDGSYN----PNQGSYQTGQGFTGKPLNEKYEEPE 467
G N G +Y P G++G G+ N P G+ GQG++G + P+
Sbjct: 323 GGYNQGGPRNYNPQGAGNFGPASGAGNLGPAPGAGNPGYGQGYSGPGQEQNQTFPQ 378
>At1g09070.1 68414.m01012 C2 domain-containing protein / src2-like
protein, putative similar to cold-regulated gene SRC2
[Glycine max] GI:2055230; contains Pfam profile PF00168:
C2 domain; identical to cDNA src2-like protein
GI:3426059
Length = 324
Score = 31.9 bits (69), Expect = 0.30
Identities = 34/98 (34%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Frame = +3
Query: 177 PSDYYQPQA-SEQQASVVAPPNSQ--PREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSY 347
PS Y PQ ++ V P P Y G+Y P QG Y G Q G Y
Sbjct: 183 PSSGYPPQGHDDKHDGVYGYPQQAGYPAGTGGYPPPGAY-PQQGGY---PGYPPQQQGGY 238
Query: 348 G--PNQGSYGQNDGSYNPNQGSY-QTGQGFTGKPLNEK 452
P QG YG Y P QG Y Q GKP K
Sbjct: 239 PGYPPQGPYGYPQQGY-PPQGPYGYPQQQAHGKPQKPK 275
>At2g25970.1 68415.m03117 KH domain-containing protein
Length = 632
Score = 31.5 bits (68), Expect = 0.40
Identities = 23/69 (33%), Positives = 29/69 (42%)
Frame = +3
Query: 201 ASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQND 380
+ E+ AS APP+S Y + G P QGS GQ YG S G Q
Sbjct: 467 SQEEDASQAAPPSSAQSGQAGYGTTGQQPPAQGS--TGQAGYGAPPTS---QAGYSSQPA 521
Query: 381 GSYNPNQGS 407
+YN G+
Sbjct: 522 AAYNSGYGA 530
Score = 27.1 bits (57), Expect = 8.7
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Frame = +3
Query: 228 APPNSQPREGKA-YQSQGSYVPNQGS-------YNQGQGDYGQNLGSYGPNQGSYGQNDG 383
+P S P++ A Y Q S P+Q S Y Q Q + GS P + G N
Sbjct: 360 SPYGSYPQQTSAGYYDQSSVPPSQQSAQGEYDYYGQQQSQQPSSGGSSAPPTDTTGYN-- 417
Query: 384 SYNPNQGSYQTGQGF 428
Y G Q GQG+
Sbjct: 418 YYQHASGYGQAGQGY 432
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 31.1 bits (67), Expect = 0.53
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +3
Query: 225 VAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQND--GSYNPN 398
V P P A+ +G + G D G N+G + PN G +G + GS
Sbjct: 474 VGLPGVAPHVNPAFFGRGMPMNGMGMMPNAGVDGGHNMGMWDPNSGGWGAGEDLGSGRAA 533
Query: 399 QGSY 410
+ SY
Sbjct: 534 ESSY 537
>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type, domain
Length = 745
Score = 31.1 bits (67), Expect = 0.53
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +3
Query: 234 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQ 413
P R G + + S+ P NQGQ +GQN S N + Q + NQG +
Sbjct: 317 PQHVGRSGNSRLGESSFPPLSVQANQGQSRFGQNSESLVSNTTTTRQR---HRANQGQSR 373
Query: 414 TGQ 422
GQ
Sbjct: 374 FGQ 376
>At2g05540.1 68415.m00586 glycine-rich protein
Length = 135
Score = 31.1 bits (67), Expect = 0.53
Identities = 19/75 (25%), Positives = 25/75 (33%)
Frame = +3
Query: 246 PREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQG 425
P G G Y G Y G YG G YG G Y + Y G
Sbjct: 59 PGGGYGGNPGGGYGNRGGGYRNRDGGYGNRGGGYGNRGGGYCRYGCCYRGYYGGCFRCCA 118
Query: 426 FTGKPLNEKYEEPEP 470
+ G+ + + + EP
Sbjct: 119 YAGQAVQTQPQSTEP 133
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 30.7 bits (66), Expect = 0.70
Identities = 18/62 (29%), Positives = 22/62 (35%)
Frame = +3
Query: 249 REGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGF 428
R G +Y G G Y+ G G Y G G G + G Y +G G G
Sbjct: 96 RGGGSYGGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGYGGSGG 155
Query: 429 TG 434
G
Sbjct: 156 GG 157
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 30.3 bits (65), Expect = 0.93
Identities = 22/85 (25%), Positives = 36/85 (42%)
Frame = +3
Query: 192 QPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYG 371
Q E++ + N+ G+ + +GS+ S+ G+G G+ G YG G +
Sbjct: 362 QAVVEEKKTNSRGGGNNGGSRGRYFSGRGSF--RNESFKGGRGGGGR--GGYGRGGGEFS 417
Query: 372 QNDGSYNPNQGSYQTGQGFTGKPLN 446
S NP G G+G+ P N
Sbjct: 418 GRPKSSNPRNG----GEGYQRVPQN 438
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 30.3 bits (65), Expect = 0.93
Identities = 22/85 (25%), Positives = 36/85 (42%)
Frame = +3
Query: 192 QPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYG 371
Q E++ + N+ G+ + +GS+ S+ G+G G+ G YG G +
Sbjct: 361 QAVVEEKKTNSRGGGNNGGSRGRYFSGRGSF--RNESFKGGRGGGGR--GGYGRGGGEFS 416
Query: 372 QNDGSYNPNQGSYQTGQGFTGKPLN 446
S NP G G+G+ P N
Sbjct: 417 GRPKSSNPRNG----GEGYQRVPQN 437
>At5g04170.1 68418.m00405 calcium-binding EF hand family protein low
similarity to peflin [Homo sapiens] GI:6015440; contains
INTERPRO:IPR002048 calcium-binding EF-hand domain
Length = 354
Score = 30.3 bits (65), Expect = 0.93
Identities = 32/114 (28%), Positives = 43/114 (37%), Gaps = 4/114 (3%)
Frame = +3
Query: 111 PDPQYALKALPKDYYQQTYKALPSDYYQPQ-ASEQQASVVAPPNSQPREGKAYQSQGSYV 287
P P Y+ Y T S Y P AS+ Q+S + P A Y
Sbjct: 24 PQPPYSSGGNNPPYGSSTTS---SPYAVPYGASKPQSSSSSAPTYGSSSYGAPPPSAPYA 80
Query: 288 PNQGSYNQ--GQGDYGQNLGSYGPNQGS-YGQNDGSYNPNQGSYQTGQGFTGKP 440
P+ G YN+ + YG G+ P+ S YG P+Q S G G+ P
Sbjct: 81 PSPGDYNKPPKEKPYGGGYGAPPPSGSSDYGSYGAGPRPSQPSGH-GGGYGATP 133
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 30.3 bits (65), Expect = 0.93
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +3
Query: 276 GSYVPNQGSYNQGQGDYGQNLGSYGPNQ-GSYGQND-GSYNPNQGSY 410
G Y G Y G G G+ G G + G YG D GSY G +
Sbjct: 123 GGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGGGDGGSYGGGGGGW 169
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 30.3 bits (65), Expect = 0.93
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +3
Query: 225 VAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYG 350
V P N +P +AY G Y SY G G YG G YG
Sbjct: 108 VNPANDRPSAPRAYGGGGGY-----SYGGGGGGYGGGGGGYG 144
>At3g53340.1 68416.m05885 CCAAT-box binding transcription factor,
putative similar to CAAT-box DNA binding protein subunit
B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains
Pfam PF00808 : Histone-like transcription factor
(CBF/NF-Y) and archaeal histone
Length = 228
Score = 30.3 bits (65), Expect = 0.93
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 189 YQPQASEQQASVVAPPNSQPREGKAYQ-SQGSYVPNQGSYNQGQGDYGQNL 338
Y+ + + S +S R+G+ Q SQ S VP QGS++QG Q+L
Sbjct: 116 YREMEGDTKGSGKGGESSAKRDGQPSQVSQFSQVPQQGSFSQGPYGNSQSL 166
>At1g51920.1 68414.m05853 expressed protein
Length = 78
Score = 30.3 bits (65), Expect = 0.93
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +2
Query: 26 SRRGSRCEGCTYCSRKSMGRSCCRCCTT 109
S R C C C +G SCCRCC +
Sbjct: 39 SSRRPICPACVCCEPAPLG-SCCRCCAS 65
>At5g61660.1 68418.m07736 glycine-rich protein
Length = 134
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Frame = +3
Query: 240 SQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGS---YGPNQGSYGQNDGSYNPNQGSY 410
S P G Y + P G G YG GS YG G G G Y G+
Sbjct: 50 SAPGSGWGYGAGSGRSPTGWGRGSGYG-YGSGSGSGTGYGYGSGGGGARGGGYGYGSGNG 108
Query: 411 QTGQGFTGKPLN 446
++G G G N
Sbjct: 109 RSGGGGGGGGFN 120
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = +3
Query: 225 VAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQG 404
V+ P+ P +G S G +G + G+G + G YG G YG G
Sbjct: 74 VSGPDGAPVQGN---SGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRGGSD 130
Query: 405 SYQTGQ 422
Y+ G+
Sbjct: 131 CYKCGE 136
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/57 (28%), Positives = 18/57 (31%)
Frame = +3
Query: 255 GKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQG 425
G Y G G +G G Y G Y G G G G Y G+G
Sbjct: 108 GGGYSGGGGSYGGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEG 164
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/60 (28%), Positives = 21/60 (35%)
Frame = +3
Query: 255 GKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTG 434
G +Y G G Y+ G G Y G G G + G Y +G G G G
Sbjct: 115 GGSYGGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGYGGSGGGG 174
>At1g55170.1 68414.m06301 expressed protein
Length = 283
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +3
Query: 318 GDYGQNLGSY-GPNQGSYGQNDGSYNPNQGS--YQTGQGFTGKPLNEKY 455
G YG N + G +GSYG+ND ++ S Y G G KP +++
Sbjct: 235 GSYGMNYNNMDGTFRGSYGENDTYLGSSERSQYYSHGSGSQKKPRLDRH 283
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 246 PREGKAYQSQGSYVPNQGSYNQGQGD 323
PR+ YQ QG Y+P+ G++ + +GD
Sbjct: 278 PRKTNGYQQQGGYMPS-GAFTRSEGD 302
>At1g29380.1 68414.m03592 hypothetical protein
Length = 228
Score = 29.9 bits (64), Expect = 1.2
Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Frame = +3
Query: 276 GSYVPNQGSYNQGQGDYGQNLGSYG---PNQGSYGQNDGSYNPNQGSYQTGQGFTG 434
G Y P G+ G GD G G YG P G G D G Y G G TG
Sbjct: 84 GGYPPLYGTTPPGGGDVGGGGGGYGGGTPGGGGGGGGDTGAGAGGGGY-GGGGDTG 138
>At3g63180.1 68416.m07097 expressed protein
Length = 978
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 207 EQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQ 317
+ Q S AP N QP +GK +S GS GS + G+
Sbjct: 883 QTQISFAAPTNPQPSQGKQGRSGGSSPSVTGSASHGK 919
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/76 (25%), Positives = 30/76 (39%)
Frame = +3
Query: 105 QQPDPQYALKALPKDYYQQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSY 284
QQP PQ + + S + QPQ S S A + + ++ G
Sbjct: 630 QQP-PQPLQRQSQAQRESKASSCSSSSHRQPQVSVNSLSSQANVQQHRQMSQKFEVAGVN 688
Query: 285 VPNQGSYNQGQGDYGQ 332
++GS+ Q G +GQ
Sbjct: 689 TDSRGSHTQKGGPFGQ 704
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/90 (21%), Positives = 31/90 (34%)
Frame = +3
Query: 177 PSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPN 356
PS P + PP+S + + Q + N G+ N + + N
Sbjct: 38 PSPPAPPPPDDSSNGSPQPPSSDSQSPPSPQGNNNNDGNNGNNNNDNNNNNNGNNNNDNN 97
Query: 357 QGSYGQNDGSYNPNQGSYQTGQGFTGKPLN 446
G+ N+ + N N G+ G G N
Sbjct: 98 NGNNKDNNNNGNNNNGNNNNGNDNNGNNNN 127
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.5 bits (63), Expect = 1.6
Identities = 21/75 (28%), Positives = 26/75 (34%)
Frame = +3
Query: 231 PPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSY 410
P S R +Y S + SY G YG G YG G + G + G Y
Sbjct: 187 PKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHGGPASRYAGGY 246
Query: 411 QTGQGFTGKPLNEKY 455
G+G G Y
Sbjct: 247 GYGRGSVGPEFGGGY 261
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/68 (26%), Positives = 25/68 (36%)
Frame = +3
Query: 204 SEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDG 383
+E + S+ P S + S SY G Y G YG G + G + G
Sbjct: 185 AEPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHGGPASRYAG 244
Query: 384 SYNPNQGS 407
Y +GS
Sbjct: 245 GYGYGRGS 252
Score = 27.5 bits (58), Expect = 6.5
Identities = 27/82 (32%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Frame = +3
Query: 228 APPN--SQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYG-PNQ---GSYGQNDGSY 389
+PP+ S PR + S SY G ++ G G + S+G P G YG GS
Sbjct: 194 SPPSYGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHGGPASRYAGGYGYGRGSV 253
Query: 390 NPN-QGSYQT-GQGFTGKPLNE 449
P G Y G G G NE
Sbjct: 254 GPEFGGGYNNYGGGSLGGYRNE 275
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 291 NQGSYNQGQGD-YGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTG 419
+QG YN+G G YG G YG ++ G DG Y QG + G
Sbjct: 142 DQGGYNRGGGGGYG---GGYGGDRREGGYGDGGYG-GQGRSEGG 181
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 29.5 bits (63), Expect = 1.6
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 10/110 (9%)
Frame = +3
Query: 189 YQPQASEQQASVVAPPNSQPREGKA-YQSQGSYVPN--QGSY----NQGQGDYGQNL--- 338
Y P Q +APP +Q A YQ++G Y P G + Q Q GQ+
Sbjct: 896 YVPPIPYQHGGYMAPPGAQGYAQPAPYQNRGGYQPRGPSGRFPSEPYQSQSREGQHASRG 955
Query: 339 GSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTGKPLNEKYEEPEPTGPPRG 488
G Y N + Q + +G+ G+ +++ + + G RG
Sbjct: 956 GGYSGNHQNQHQQQQWHGQGGSEQNNPRGYNGQHHHQQGGDHDRRGRGRG 1005
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 246 PREGKAYQSQGSYVPNQGSYNQGQGD 323
PR+ YQ QG Y+PN G+ + +GD
Sbjct: 276 PRKTNGYQQQGGYMPN-GTLTRPEGD 300
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 246 PREGKAYQSQGSYVPNQGSYNQGQGD 323
PR+ YQ QG Y+PN G+ + +GD
Sbjct: 276 PRKTNGYQQQGGYMPN-GTLTRPEGD 300
>At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK,
putative similar to cyclin dependent kinase C
[Lycopersicon esculentum] gi|15215944|emb|CAC51391
Length = 505
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +3
Query: 324 YGQNLGSYGPNQ-GSYGQNDGSYNPNQGSYQTG 419
YG+ G GPN+ G G YN ++G Y +G
Sbjct: 416 YGKPRGPPGPNRYPPSGNQSGGYNQSRGGYSSG 448
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Frame = +3
Query: 270 SQGSYVPNQGSYNQGQGDYGQNLGSYG---PNQGSYGQNDGSYNPNQGSYQTGQGF 428
S GSY P G G + G YG PN GQ GS + +G Q Q +
Sbjct: 446 SSGSYPPQGRGAPYVAGPRGPSGGPYGVGPPNYTQGGQYGGSGSSGRGQNQRNQQY 501
>At4g12610.1 68417.m01987 transcription initiation factor IIF alpha
subunit (TFIIF-alpha) family protein low similarity to
SP|Q05913 Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha) (Transcription factor 5, large
chain) (TF5A) {Drosophila melanogaster}; contains Pfam
profile PF05793: Transcription initiation factor IIF,
alpha subunit (TFIIF-alpha)
Length = 543
Score = 29.1 bits (62), Expect = 2.1
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Frame = +3
Query: 207 EQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLG-SYGPNQGSYGQNDG 383
E++ ++AP P E K + +G ++ + + LG + G ++ +D
Sbjct: 305 EEREDLLAPEIPAPPEIKQDEDDEENEEEEGGLSKSGKELKKLLGKANGLDESDEDDDDD 364
Query: 384 SYNPNQGSYQTGQGFTGK------PLNEKYEEPEPTGPPRG 488
S + + +Y T K P++ +P P+GPPRG
Sbjct: 365 SDDEEETNYGTVTNSKQKEAAKEEPVDNAPAKPAPSGPPRG 405
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 105 QQPDPQYALKALPKDYYQQTYKALPSDYYQPQASEQQ 215
Q P PQY + +QQ ++ PS +Q Q +QQ
Sbjct: 32 QHPPPQYVQRGNYAQNHQQQFQQAPSQPHQYQQQQQQ 68
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 105 QQPDPQYALKALPKDYYQQTYKALPSDYYQPQASEQQ 215
Q P PQY + +QQ ++ PS +Q Q +QQ
Sbjct: 32 QHPPPQYVQRGNYAQNHQQQFQQAPSQPHQYQQQQQQ 68
>At3g01600.1 68416.m00091 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
Length = 370
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 318 GDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTGKPLNEKYEEPEP 470
G G+ +G Y ++ +Y Q NP++G ++ G G P K P P
Sbjct: 197 GTEGKEIGDYVVSKITYQQQKLGENPDEG--ESSSGVRGGPTTPKTNTPTP 245
>At4g27550.1 68417.m03958 alpha, alpha-trehalose-phosphate synthase,
UDP-forming, putative / trehalose-6-phosphate synthase,
putative / UDP-glucose-glucosephosphate
glucosyltransferase, putative similar to
trehalose-6-phosphate synthase SL-TPS/P [Selaginella
lepidophylla] GI:4100325; contains Pfam profiles
PF00982: Glycosyltransferase family 20, PF02358:
Trehalose-phosphatase
Length = 795
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -1
Query: 560 WCRSSLQITLQDDTGDWVGETVEEA--PWWTGWFGLFVFFI*RLSGESLTGLVASLVW 393
W + + L+ +G+WV E W G +F +F R G L ASLVW
Sbjct: 579 WLAAENGMFLRHTSGEWVTRIPEHMNLEWIDGVKHVFKYFTERTPGSYLETSEASLVW 636
>At2g05530.1 68415.m00585 glycine-rich protein
Length = 115
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/53 (33%), Positives = 20/53 (37%)
Frame = +3
Query: 267 QSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQG 425
+S+ YN G G G G G N G G N G YN G G G
Sbjct: 29 KSESGETVQPDQYNGGHGGNGGYNGGGGYNGGG-GHNGGGYNGGGGYNGGGHG 80
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 28.3 bits (60), Expect = 3.7
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Frame = +3
Query: 228 APPNS-QPREGKAYQSQGSYVPNQGSYNQ----GQGDYGQNLGSYGPNQGSYGQNDGSYN 392
A PNS + R G S P+ YN G G YG + G N G Y + S+
Sbjct: 9 ADPNSYRQRSGAPVGSSQPMDPSAAPYNPRYTGGGGGYGPSPVMAGDNSG-YNRYP-SFQ 66
Query: 393 PNQGSYQTGQG 425
P G + G+G
Sbjct: 67 PPSGGFSVGRG 77
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 28.3 bits (60), Expect = 3.7
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Frame = +3
Query: 228 APPNS-QPREGKAYQSQGSYVPNQGSYNQ----GQGDYGQNLGSYGPNQGSYGQNDGSYN 392
A PNS + R G S P+ YN G G YG + G N G Y + S+
Sbjct: 9 ADPNSYRQRSGAPVGSSQPMDPSAAPYNPRYTGGGGGYGPSPVMAGDNSG-YNRYP-SFQ 66
Query: 393 PNQGSYQTGQG 425
P G + G+G
Sbjct: 67 PPSGGFSVGRG 77
>At5g19400.1 68418.m02312 expressed protein
Length = 1093
Score = 28.3 bits (60), Expect = 3.7
Identities = 34/129 (26%), Positives = 48/129 (37%), Gaps = 4/129 (3%)
Frame = +3
Query: 111 PDPQYALKALPKDYYQ-QTYKALPSDYYQPQASEQQASVVAPPNSQPRE-GKAYQSQGSY 284
P P +L A Q Q + LPS Q ++ Q S V+P +SQ G +
Sbjct: 769 PQPAQSLAASRLQPIQSQVAQPLPSRVVHFQQTQAQVSHVSPAHSQSTSFGGGSKWSPEE 828
Query: 285 VPNQGSYNQGQGDYGQNLGSYGPNQGSYGQN--DGSYNPNQGSYQTGQGFTGKPLNEKYE 458
+ S G G QG++G + P SY G G G P ++
Sbjct: 829 AASLASSLSGFAQLGNGHVMRNEMQGNHGVSYYPAHSLPVHQSY-NGNGMGGMPYSQS-R 886
Query: 459 EPEPTGPPR 485
PE PP+
Sbjct: 887 TPEAVFPPK 895
>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
response factor 30 (GI:20145855) {Arabidopsis thaliana}
Length = 313
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 300 SYNQGQGDYGQNLGSYG-PNQGSYGQNDGSYNPNQGSYQTGQGFT 431
S++ G G G N G +G + GS+G G + N G G G++
Sbjct: 28 SWSWGSGQSGSN-GDWGWSSGGSFGSGSGGSDSNSGGSSWGWGWS 71
>At4g08130.1 68417.m01337 hypothetical protein
Length = 226
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/64 (29%), Positives = 25/64 (39%)
Frame = +3
Query: 279 SYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQGFTGKPLNEKYE 458
+YV +G NQ N+G YG Q +Y P Q Y + FT Y+
Sbjct: 25 NYVGGRGYQNQRLEHQRGNIGVYGNGQPNYTHKSQFQQPFQ--YSSSFSFTRNYDLASYQ 82
Query: 459 EPEP 470
P P
Sbjct: 83 APPP 86
>At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein /
GYF domain-containing protein contains Pfam domains
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF02213: GYF domain
Length = 659
Score = 28.3 bits (60), Expect = 3.7
Identities = 29/107 (27%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
Frame = +3
Query: 195 PQASEQQASVVAPPNSQPRE----GKAYQSQGSYVP----NQGSYNQGQGDYGQNLGSYG 350
P + + +V + PN+Q + +Q S P NQ S + GQG N+G G
Sbjct: 444 PPSDSWKVAVPSQPNAQAQAQWGMNMVNNNQNSAQPQAPANQNS-SWGQGTVNPNMGWVG 502
Query: 351 PNQGSYGQN-DGSYNPNQGSYQTGQGFTGKPLNEKYEEPEPTGPPRG 488
P Q N GS P+ T G+ + P P P G
Sbjct: 503 PAQTGVNVNWGGSSVPSTVQGITHSGWVAPVQGQTQAYPNPGWGPTG 549
>At1g61070.1 68414.m06876 plant defensin-fusion protein, putative
(PDF2.4) plant defensin protein family member, personal
communication, Bart Thomma
(Bart.Thomma@agr.kuleuven.ac.be); contains gamma-thionin
domain
Length = 76
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 387 SCHRFDRNCLDLARSCLDFGHNRLGPDYSCLGLERSCLGSDRPC 256
S + F+ CL + +C + HN D C G R CL RPC
Sbjct: 35 SSNLFNGPCLS-SSNCANVCHNEGFSDGDCRGFRRRCL-CTRPC 76
>At5g64960.1 68418.m08171 cyclin-dependent kinase, putative / CDK,
putative similar to cyclin dependent kinase C
[Lycopersicon esculentum] gi|15215944|emb|CAC51391
Length = 513
Score = 27.9 bits (59), Expect = 5.0
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Frame = +3
Query: 237 NSQPREGK---AYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGS---YNPN 398
N+Q R G AY QG P G YG +Y G YG + GS NP
Sbjct: 442 NNQSRGGYSSGAYPPQGRGAPYGAGPRGPSGGYGVGPPNYSQGGGQYGGSGGSGRGQNPM 501
Query: 399 QGSYQTGQGF 428
G+ G+
Sbjct: 502 GGARNQQYGW 511
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +3
Query: 285 VPNQGSYNQGQGDYGQNLGSYG---PNQGSYGQNDGSYN 392
VP SY+ G YG G YG P+ G G G Y+
Sbjct: 208 VPPPTSYSGGPPSYGGPRGGYGSDAPSTGGRGGRSGGYD 246
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +3
Query: 255 GKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSY---NPNQGS 407
G +Y +G Y G N+G G G G G G DG + NP+ G+
Sbjct: 44 GGSYGGRGGYGGGGGRGNRGGGGGGYQGGDRGGRGSGGGGRDGDWRCPNPSCGN 97
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +3
Query: 219 SVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQN 377
SV S PR Q G G Y G GD ++ S GP++ +G N
Sbjct: 365 SVTMAEKSAPRAPTFDQRGGGRGGGGGGYGGGGGDRRRDNYSSGPDRNHHGGN 417
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +3
Query: 285 VPNQGSYNQGQGDYGQNLGSYG---PNQGSYGQNDGSYN 392
VP SY+ G YG G YG P+ G G G Y+
Sbjct: 208 VPPPTSYSGGPPSYGGPRGGYGSDAPSTGGRGGRSGGYD 246
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +3
Query: 255 GKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSY---NPNQGS 407
G +Y +G Y G N+G G G G G G DG + NP+ G+
Sbjct: 44 GGSYGGRGGYGGGGGRGNRGGGGGGYQGGDRGGRGSGGGGRDGDWRCPNPSCGN 97
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +3
Query: 219 SVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQN 377
SV S PR Q G G Y G GD ++ S GP++ +G N
Sbjct: 365 SVTMAEKSAPRAPTFDQRGGGRGGGGGGYGGGGGDRRRDNYSSGPDRNHHGGN 417
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Frame = +3
Query: 345 YGPNQGSY---GQNDGSYNPNQGSYQTGQGFTGKPLNEKYEEPEPTGPPRGFFYSFTYP 512
Y P G+Y G G+Y P G Y G+ G P Y P P G + YP
Sbjct: 37 YPPPPGAYPPAGYPPGAYPPAPGGYPPAPGYGGYPPAPGY-GGYPPAPGHGGYPPAGYP 94
>At4g17890.1 68417.m02666 human Rev interacting-like family protein
/ hRIP family protein contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 413
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +3
Query: 177 PSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLG 341
P D Q E+ A V+ P S G++ S GS ++ YN GQ++G
Sbjct: 211 PKDNLYEQKPEEVAPVI-PAVSSTNNGESKSSAGSSFASRFEYNDDLQSGGQSVG 264
>At2g38470.1 68415.m04725 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain;
Length = 519
Score = 27.9 bits (59), Expect = 5.0
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Frame = +3
Query: 237 NSQPREGKAYQSQGSYVPNQGSYN-QGQGDYG-QNLGSYGPNQGSYGQNDGSYNPNQGSY 410
N P++ + + + + +Y Q Y Q L + N G +G + N N +
Sbjct: 431 NRAPQDSSSVPIRPAAIAGHSNYTTSSQAPYTLQMLHNNNTNTGPFGYAMNNNN-NNSNL 489
Query: 411 QTGQGFTGKPLNEKYEEPEPTGPPRGFFYSF 503
QT Q F G + EEP FF SF
Sbjct: 490 QTQQNFVGGGFSRAKEEP---NEETSFFDSF 517
>At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger)
family protein similar to BRCA1-associated protein 2
[Homo sapiens] GI:3252872; contains Pfam profiles
PF00097: Zinc finger, C3HC4 type (RING finger), PF02148:
Zn-finger in ubiquitin-hydrolases and other protein
Length = 461
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 38 SRCEGCTYCSRKSMGRSCCRCCTT 109
S C C YC ++ CC C TT
Sbjct: 201 SSCPVCRYCQQQPENSVCCVCQTT 224
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 255 GKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYN 392
G + S GS+ N G G G YG G + + S+GQ N
Sbjct: 115 GGFFTSAGSFFRNNGFAGTGNGGYGNENGGF-RRKKSFGQGKRRMN 159
>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
contains Pfam profile: PF01363 FYVE zinc finger
Length = 601
Score = 27.9 bits (59), Expect = 5.0
Identities = 29/116 (25%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
Frame = +3
Query: 105 QQPDPQYALKALPKDYYQQT-YKALPSDYYQPQASEQQASVV-----APPNSQPREG--K 260
QQP Q+ + P D +Q + Y + P P + A APP S
Sbjct: 138 QQPTSQHMYYS-PYDQHQTSGYSSAPPPSSAPAPNPNPAPYSSSLYSAPPYSSGGSSIPP 196
Query: 261 AYQSQGSYVPNQG--SYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQ 422
+Y+ G YN+ + D G +L + G Y + SY +YQ G+
Sbjct: 197 SYEKPSVKFDQSGYDGYNRSRSDLGSDLYGKRSDSGEYPAFEDSYGDGVYAYQGGK 252
>At1g15130.1 68414.m01807 hydroxyproline-rich glycoprotein family
protein
Length = 846
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/52 (38%), Positives = 21/52 (40%)
Frame = +3
Query: 177 PSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQ 332
P QP S QQ S P QPR Y Q Y P +QG G Y Q
Sbjct: 801 PQAQQQPHPSWQQGSYYDPQGQQPR--PPYPGQSPYQPP----HQGGGYYRQ 846
>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
catalytic subunit, putative similar to SP|Q07864 DNA
polymerase epsilon, catalytic subunit A (EC 2.7.7.7)
(DNA polymerase II subunit A) {Homo sapiens}; contains
Pfam profiles: PF03175 DNA polymerase type B, organellar
and viral, PF00136 DNA polymerase family B, PF03104 DNA
polymerase family B, exonuclease domain
Length = 2271
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 189 YQPQASEQQASVVAPPNSQPREGKAYQSQ 275
Y PQA +A+VV P +Q K YQ+Q
Sbjct: 488 YLPQAQAYKANVVCPNKNQADPEKFYQNQ 516
>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
protein low similarity to transcriptional repressor
Not4-Np [Homo sapiens] GI:6856207; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif)
Length = 944
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 423 GFTGKPLNEKYEEPEPTGPPRGFFYSFTYPV 515
GF G N YEEP+ P G Y+ TY +
Sbjct: 914 GFNGSLYNNGYEEPKFRIPSPGDVYNRTYGI 944
>At5g53180.1 68418.m06611 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 429
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +3
Query: 267 QSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQ 401
Q QG +V G + G G G N P+ S Q G + P Q
Sbjct: 376 QPQGGWVQPGGQGSMGMGGGGHNHYMAPPSSSSMHQGPGGHMPPQ 420
>At4g28520.3 68417.m04081 12S seed storage protein, putative /
cruciferin, putative strong similarity to SP|P33525
Cruciferin CRU1 precursor (11S globulin) (12S storage
protein) from Brassica napus; contains Pfam profile
PF00190 Cupin and Prosite 11-S plant seed storage
proteins signature PS00305 isoform contains
non-consensus AC acceptor splice site at intron 3
Length = 453
Score = 27.5 bits (58), Expect = 6.5
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +3
Query: 237 NSQPREGKAY-QSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQ 413
+SQP +G+ Q QG +GQG GQ P +G Q QG
Sbjct: 119 DSQPMQGQQQGQPWQGRQGQQGQPWEGQGQQGQQGRQGQPWEGQGQQGQQGRQGQQGQPW 178
Query: 414 TGQGFTGK 437
GQG G+
Sbjct: 179 EGQGQQGQ 186
>At4g28520.2 68417.m04079 12S seed storage protein, putative /
cruciferin, putative strong similarity to SP|P33525
Cruciferin CRU1 precursor (11S globulin) (12S storage
protein) from Brassica napus; contains Pfam profile
PF00190 Cupin and Prosite 11-S plant seed storage
proteins signature PS00305 isoform contains
non-consensus AC acceptor splice site at intron 3
Length = 394
Score = 27.5 bits (58), Expect = 6.5
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +3
Query: 237 NSQPREGKAY-QSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQ 413
+SQP +G+ Q QG +GQG GQ P +G Q QG
Sbjct: 119 DSQPMQGQQQGQPWQGRQGQQGQPWEGQGQQGQQGRQGQPWEGQGQQGQQGRQGQQGQPW 178
Query: 414 TGQGFTGK 437
GQG G+
Sbjct: 179 EGQGQQGQ 186
>At4g28520.1 68417.m04080 12S seed storage protein, putative /
cruciferin, putative strong similarity to SP|P33525
Cruciferin CRU1 precursor (11S globulin) (12S storage
protein) from Brassica napus; contains Pfam profile
PF00190 Cupin and Prosite 11-S plant seed storage
proteins signature PS00305 isoform contains
non-consensus AC acceptor splice site at intron 3
Length = 524
Score = 27.5 bits (58), Expect = 6.5
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +3
Query: 237 NSQPREGKAY-QSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQ 413
+SQP +G+ Q QG +GQG GQ P +G Q QG
Sbjct: 119 DSQPMQGQQQGQPWQGRQGQQGQPWEGQGQQGQQGRQGQPWEGQGQQGQQGRQGQQGQPW 178
Query: 414 TGQGFTGK 437
GQG G+
Sbjct: 179 EGQGQQGQ 186
>At4g19590.1 68417.m02879 DNAJ heat shock N-terminal
domain-containing protein protein YJL162c, Saccharomyces
cerevisiae, PIR2:S56945; contains Pfam PF00226: DnaJ
domain;
Length = 345
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +3
Query: 234 PNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSYN 392
P QP + K Q PNQ Q QN PNQ N S N
Sbjct: 144 PKQQPNQQKQPPDQQKQPPNQPRQPPNQQKQPQNEPKQPPNQPKQPPNQASTN 196
>At2g28700.1 68415.m03488 MADS-box protein-related contains
INTERPRO: IPR002100 MADS-box domain
Length = 329
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 378 DGSYNPNQGSYQTGQGFTGKPLNEKYEE 461
D YNPNQ Y+ QGF + + KY E
Sbjct: 287 DEVYNPNQNHYENQQGFIDEMM--KYAE 312
>At1g67890.1 68414.m07752 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 765
Score = 27.5 bits (58), Expect = 6.5
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +3
Query: 279 SYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDGSY--NPNQGSYQTGQGFTGKPLNEK 452
S P Q + D +G+ ++ G N+ S+ N GS+Q+ QGF +++
Sbjct: 261 SQQPIQAAIASKISDLASKVGNKVRSKMRAGDNNASHPEGGNGGSHQSDQGFFDAAFSDQ 320
Query: 453 YEEPE--PTGPPRG 488
E+ E PRG
Sbjct: 321 REDAETNDASTPRG 334
>At1g53260.1 68414.m06035 hypothetical protein low similarity to
SP|Q38732 DAG protein, chloroplast precursor
{Antirrhinum majus}
Length = 358
Score = 27.5 bits (58), Expect = 6.5
Identities = 24/86 (27%), Positives = 30/86 (34%)
Frame = +3
Query: 183 DYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQG 362
+Y P A + PP S G+ YQ G PN QG N GP
Sbjct: 240 NYQGPPAPNMNQNYQGPPPSNM--GQNYQ--GPPPPNMNQSYQGPPPPNMNQSYQGPPPS 295
Query: 363 SYGQNDGSYNPNQGSYQTGQGFTGKP 440
+ GQN P+ Q + G P
Sbjct: 296 NMGQN--YRGPSLPPPNMSQNYEGPP 319
>At1g22620.1 68414.m02824 phosphoinositide phosphatase family
protein contains similarity to phosphoinositide
phosphatase SAC1 [Rattus norvegicus]
gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
SacI homology domain; identical to cDNA SAC domain
protein 1 (SAC1) SAC1-FRA7 allele, GI:31415718
Length = 912
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 483 RGFFYSFTYPVSSIVLKSDLQGG 551
+ FFYS+TYP+ + K+ L G
Sbjct: 180 KDFFYSYTYPIMQSLQKNVLSSG 202
>At1g19220.1 68414.m02392 transcriptional factor B3 family protein /
auxin-responsive factor AUX/IAA-related contains Pfam
profile: PF02309 AUX/IAA family
Length = 1086
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/71 (23%), Positives = 26/71 (36%)
Frame = +3
Query: 147 DYYQQTYKALPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDY 326
++ Q +A P+ Q +QQ Q ++ + Q V QG YN G
Sbjct: 479 NHISQQMQAQPAMVKSQQQQQQQQQQHQHQQQQLQQQQQLQMSQQQVQQQGIYNNGTIAV 538
Query: 327 GQNLGSYGPNQ 359
+ PNQ
Sbjct: 539 ANQVSCQSPNQ 549
>At4g39680.1 68417.m05614 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 633
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 147 DYYQQTYKALPSDYYQPQASEQQASVVAPPNSQ 245
D +++T KA+P YY P + EQ A+ +A N++
Sbjct: 602 DLFKKT-KAIPRIYYLPLSEEQVAAKLAANNNK 633
>At4g34400.1 68417.m04886 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 389
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/82 (23%), Positives = 29/82 (35%)
Frame = +3
Query: 204 SEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGPNQGSYGQNDG 383
SE + + P SQ + K Q S + DY + G + S + D
Sbjct: 187 SEFKVAKPTIPKSQKKGKKKEQVVESSDDEEDEEEDSDSDYIETFGQLDIEENSISEEDS 246
Query: 384 SYNPNQGSYQTGQGFTGKPLNE 449
SY P++ T K N+
Sbjct: 247 SYAPDKEDTATASFVKPKVANK 268
>At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing
protein ZIGA2 (ZIGA2) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA2 from GI:10441356
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 459
Score = 27.1 bits (57), Expect = 8.7
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Frame = +3
Query: 264 YQSQGSYVPNQGSYNQGQGDYGQNLG--------SYGPNQGSYGQNDGSYNPNQGSYQTG 419
+ +GS NQ S N+G G Y QN G S G + G YN +Q S
Sbjct: 332 FTKEGSTSWNQQSENEGNG-YYQNFGNGNKAANSSVGGGRPQSSSTSGHYNNSQNS--NS 388
Query: 420 QGFTGKPLNEKYEEPEPTG 476
G+ N+K E P G
Sbjct: 389 WDSWGENENKKTEAVAPKG 407
>At3g10300.3 68416.m01236 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 335
Score = 27.1 bits (57), Expect = 8.7
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Frame = +3
Query: 195 PQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYG-PNQGSYG 371
P S + P +QP A S Y G +N+ + SYG P+ G YG
Sbjct: 44 PYGSSASSPYAVPYGAQPAPYGAPPS-APYASLPGDHNKPHKEKPHG-ASYGSPSPGGYG 101
Query: 372 QNDGSYNPNQGSY-----QTGQ--GFTGKPLNEKYEEPEPTGPPRGFFYSFTYPVSSIV 527
+ S + G Y Q+G G+ G P + PP+ S+ P +S+V
Sbjct: 102 AHPSSGPSDYGGYGGAPQQSGHGGGYGGAPQQSGHGGGYGAPPPQA---SYGSPFASLV 157
>At3g10300.2 68416.m01235 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 324
Score = 27.1 bits (57), Expect = 8.7
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Frame = +3
Query: 195 PQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYG-PNQGSYG 371
P S + P +QP A S Y G +N+ + SYG P+ G YG
Sbjct: 44 PYGSSASSPYAVPYGAQPAPYGAPPS-APYASLPGDHNKPHKEKPHG-ASYGSPSPGGYG 101
Query: 372 QNDGSYNPNQGSY-----QTGQ--GFTGKPLNEKYEEPEPTGPPRGFFYSFTYPVSSIV 527
+ S + G Y Q+G G+ G P + PP+ S+ P +S+V
Sbjct: 102 AHPSSGPSDYGGYGGAPQQSGHGGGYGGAPQQSGHGGGYGAPPPQA---SYGSPFASLV 157
>At3g10300.1 68416.m01234 calcium-binding EF hand family protein low
similarity to SP|P12815 Programmed cell death protein 6
(Probable calcium-binding protein ALG-2) {Mus musculus};
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 232
Score = 27.1 bits (57), Expect = 8.7
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Frame = +3
Query: 195 PQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYG-PNQGSYG 371
P S + P +QP A S Y G +N+ + SYG P+ G YG
Sbjct: 44 PYGSSASSPYAVPYGAQPAPYGAPPS-APYASLPGDHNKPHKEKPHG-ASYGSPSPGGYG 101
Query: 372 QNDGSYNPNQGSY-----QTGQ--GFTGKPLNEKYEEPEPTGPPRGFFYSFTYPVSSIV 527
+ S + G Y Q+G G+ G P + PP+ S+ P +S+V
Sbjct: 102 AHPSSGPSDYGGYGGAPQQSGHGGGYGGAPQQSGHGGGYGAPPPQA---SYGSPFASLV 157
>At1g62240.1 68414.m07021 expressed protein
Length = 227
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Frame = +3
Query: 270 SQGSYVPNQGS---YNQGQGDYGQNLGSYGPNQGSYGQNDGSYNPNQGSYQTGQG 425
S GS+ GS Y G G + G Y + G G +GS G +G G
Sbjct: 113 SNGSFFNGSGSGTGYGSGDGRVSSS-GEYSASAGGGGSGEGSGGGGGGDGSSGSG 166
>At1g60390.1 68414.m06799 BURP domain-containing protein /
polygalacturonase, putative similar to polygalacturonase
isoenzyme 1 beta subunit GI:170480 from [Lycopersicon
esculentum]; contains Pfam profile PF03181: BURP domain
Length = 624
Score = 27.1 bits (57), Expect = 8.7
Identities = 18/85 (21%), Positives = 33/85 (38%)
Frame = +3
Query: 174 LPSDYYQPQASEQQASVVAPPNSQPREGKAYQSQGSYVPNQGSYNQGQGDYGQNLGSYGP 353
+P + ++ +V N + + S SY N + +YG++
Sbjct: 292 VPVNEFKGYGDGGNGAVYGFKNYRDQSNIGVDSFSSYAKNSNNEKVNFVNYGKSFNLGSD 351
Query: 354 NQGSYGQNDGSYNPNQGSYQTGQGF 428
N YGQ++ N + +Y GQ F
Sbjct: 352 NFTGYGQDNVGGNVSFKTYGQGQSF 376
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,739,106
Number of Sequences: 28952
Number of extensions: 252341
Number of successful extensions: 1288
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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