Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0741
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    26   2.9  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   5.1  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   5.1  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   9.0  

>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 416 MYSVICIYLYTYNITE*IRCHSCLQDN 336
           ++  +  YLY +  T+  R H CL DN
Sbjct: 302 LFKNLTFYLYEFPNTKVSRLHKCLSDN 328


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 181 FIYYSFIDGDNNIDNIKRNI 240
           F Y SFI+   N+ NI+ N+
Sbjct: 50  FNYQSFIEASENLSNIRNNL 69


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 260 VYTLSIFVINKY*IVVLNLLDEIH*YCLE 346
           V+ L  F   +Y I  LN++DE+H Y L+
Sbjct: 112 VHVLEKFRSGEYSIPNLNIVDELHSYLLQ 140


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 434 SYVLCIMYSVICIYLYTYNITE 369
           SYVL + YSV+ I+  +  +TE
Sbjct: 905 SYVLALAYSVLQIWFLSLRLTE 926


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,364
Number of Sequences: 5004
Number of extensions: 35749
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)