Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0741
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)                        29   2.3  
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_51989| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               28   5.3  
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)                  28   5.3  
SB_55022| Best HMM Match : 7tm_1 (HMM E-Value=0.011)                   27   9.3  
SB_28167| Best HMM Match : Cellulase (HMM E-Value=0.4)                 27   9.3  

>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 726

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 116 KKNTLRLKIMHTKNVFFIFYK-HLFIIVLLMETIILTILREIYYWRPYIVYT 268
           K N +      TK+  FI  K  LFI +L++  ++   L E Y+  P I YT
Sbjct: 534 KTNRIARIFSGTKSPSFISPKSQLFITLLIISPVLTITLLEFYFHPPKIKYT 585


>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -2

Query: 440 TYSYVLCIMYSVICIYLYTYNITE*IRCHSCLQDNISVFHLTS 312
           TY+YV   +Y  + +Y+Y Y +   +  +  L D+I+  H+++
Sbjct: 51  TYTYVYVYVYVYVYVYVYVY-VYVYVYIYIYLYDSIAYLHISA 92


>SB_51989| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 473

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +2

Query: 182 LFIIVLLMETIILTILREIYYWRP 253
           LFIIVL++  +I+T+LR+   +RP
Sbjct: 30  LFIIVLILTLVIVTLLRKQRGYRP 53


>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
          Length = 662

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +2

Query: 182 LFIIVLLMETIILTILREIYYWRP 253
           LFIIVL++  +I+T+LR+   +RP
Sbjct: 636 LFIIVLILTLVIVTLLRKQRGYRP 659


>SB_55022| Best HMM Match : 7tm_1 (HMM E-Value=0.011)
          Length = 441

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +2

Query: 155 NVFFIFYKHLFIIVLLMETIILTILREIYY---WRPY 256
           N+F IFY HL  ++ L   ++  +L  + Y   W P+
Sbjct: 162 NLFNIFYPHLLGLISLQAPLVSGLLNPLLYGIMWPPF 198


>SB_28167| Best HMM Match : Cellulase (HMM E-Value=0.4)
          Length = 398

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +3

Query: 99  VIRELLKKILYGLKLCILKMYSS 167
           VI ELLK  LY   L IL +YSS
Sbjct: 126 VIMELLKSCLYTFLLLILAVYSS 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,734,859
Number of Sequences: 59808
Number of extensions: 227028
Number of successful extensions: 509
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)