Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0741
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   1.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.7  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.6  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 259 NIWSPIVYFS*YCQ---YYCLHQ*NYNK*MLIKYEEYIFSMHNF 137
           NIW  I+YFS  CQ   +Y L     N    +KY+   F  +NF
Sbjct: 4   NIWWLILYFSIVCQAKAHYSLRDFKANI-FQVKYQWKYFD-YNF 45


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 6/13 (46%), Positives = 13/13 (100%)
 Frame = +1

Query: 61   QNFNRPVILDDKL 99
            +NFN+P++++D+L
Sbjct: 1032 KNFNQPLLVNDQL 1044


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 308 KRQFNIYLLQI*TVC 264
           KR+F+ YL+QI   C
Sbjct: 238 KREFSYYLIQIYIPC 252


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 308 KRQFNIYLLQI*TVC 264
           KR+F+ YL+QI   C
Sbjct: 238 KREFSYYLIQIYIPC 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,652
Number of Sequences: 438
Number of extensions: 2494
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)