Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0740
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   1.7  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    27   2.2  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   5.2  
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    25   9.0  
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    25   9.0  

>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 376 RYSERVYLIEYIQENMNNVSLKLRMSDNDDITMY 477
           R+S  +Y  EY+  N + +S  L + +N+D ++Y
Sbjct: 113 RFSANLY--EYVDGNSDGISFVLNLENNNDTSVY 144


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 457 CRSFEV*VKHYSYFLEYIQ*GIPARYILSDIYKIFEYLQIVFFLNILFVN 308
           C+S+E   +  SYF ++    + A YIL    ++F +  +   L ++F N
Sbjct: 154 CKSYE---RLKSYFRKHYWPTLKANYILWPAVQLFNFTFVPLVLQVIFAN 200


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = -3

Query: 261 HYFDIYVKYIHIQINNL--IVYKRFTDLTEN*YFSLYFVLYLTDLLKVLYRYLII 103
           HY  +  K  +   ++L  +V K +T+   +  + +  V +LTD LK + +YL++
Sbjct: 462 HYQKLVKKLSYRDPHSLETVVDKAYTESINHLVYLMEEVFHLTDHLKAIKKYLLL 516


>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 119 YKTFNKSVKYK-TKYSEKYQFSVRSVKR 199
           YK + KS K   TKY++KY  S +S+ R
Sbjct: 119 YKNWFKSKKKAFTKYAKKYAESTQSINR 146


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 119 YKTFNKSVKYK-TKYSEKYQFSVRSVKR 199
           YK + KS K   TKY++KY  S +S+ R
Sbjct: 119 YKNWFKSKKKAFTKYAKKYAESTQSINR 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,489
Number of Sequences: 5004
Number of extensions: 42188
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)