Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0739
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)             29   3.9  
SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05)            28   6.9  
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)             28   6.9  

>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
 Frame = +2

Query: 446 SGVTVSDACKTTYEEIK-KDKKHRYVVFYIRDE----------KQIDVETVGERNAEYEQ 592
           SG+ + D     Y+ ++ K+K H++  F I D+          K++D  T  E  A ++Q
Sbjct: 4   SGIKIDDESLHLYQTMQGKEKSHKFATFKISDDGKMVVIDHILKRVDTHTREEDRAIFDQ 63

Query: 593 FLEDL 607
            LE L
Sbjct: 64  MLEKL 68


>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
          Length = 1037

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 94   YQPLKRAVSKSSSDYCYVVVLINLRDNKF 180
            +QPL+  V++ S D CY  ++ N  D+ F
Sbjct: 991  FQPLEYTVAQRSKDDCYAKLICNKADSTF 1019


>SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05)
          Length = 656

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 334 PSKRAYQHSEQCRSGCR 384
           P  +AY HS+ CR GCR
Sbjct: 588 PGFQAYWHSDPCRLGCR 604


>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
          Length = 151

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 446 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 556
           SG+ V D      + +K  K H+Y +F I DE  + V
Sbjct: 4   SGIKVDDESLKLSQTMKSMKTHKYAIFKICDEANMVV 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,320,741
Number of Sequences: 59808
Number of extensions: 304849
Number of successful extensions: 623
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)