Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0735
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.76 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.00 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.3  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   1.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.3  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 258 KDWHSGHFCCWQCDESLTGQRYVLRD--EHPYCIKC 359
           K + +G  CCW C       +Y +RD  +   CI C
Sbjct: 597 KKYVAGEQCCWHC---FNCTQYQIRDHKDVTQCISC 629


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 273 GHFCCWQCDESLTGQRYVLRDEHPYCIKC 359
           G  CCW CD+      YV  DE+  C+ C
Sbjct: 463 GDTCCWVCDQ-CEEYEYV-HDEYT-CMDC 488


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 273 GHFCCWQCDESLTGQRYVLRDEHPYCIKC 359
           G  CCW CD+      YV  DE+  C+ C
Sbjct: 553 GDTCCWVCDQ-CEEYEYVY-DEYT-CMDC 578


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 345 YCIKCYESVFANGCEECNKIIGIDSKDLSY 434
           Y +     + ANG  E  KI+ +  KD+ Y
Sbjct: 10  YILSVAVIIRANGINEILKIMAVSMKDIRY 39


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 402 IIGIDSKDLSYKDKHWH 452
           +IGI S+D ++ DK+ H
Sbjct: 125 VIGISSRDSAFSDKNIH 141


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 458 GLVPVLVLVRQILRVNADDLVALFAAIGEDAFIALDAVGVFI 333
           GL+  L L R+ILR++A D  ++  A+G    +    + VFI
Sbjct: 213 GLIGCLTLGRRILRLDAIDEASI--AVGASGNVFAGYLLVFI 252


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = +3

Query: 387 EECNKIIGIDSKDLSYKDKHWHEACFLC 470
           ++ NK+ G+   D+    +     CF+C
Sbjct: 391 KDINKLYGMTPSDIDKYSRIVFPVCFVC 418


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = +3

Query: 387 EECNKIIGIDSKDLSYKDKHWHEACFLC 470
           ++ NK+ G+   D+    +     CF+C
Sbjct: 391 KDINKLYGMTPSDIDKYSRIVFPVCFVC 418


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = +3

Query: 387 EECNKIIGIDSKDLSYKDKHWHEACFLC 470
           ++ NK+ G+   D+    +     CF+C
Sbjct: 329 KDINKLYGMTPSDIDKYSRIVFPVCFVC 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,280
Number of Sequences: 438
Number of extensions: 2197
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)