Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0734
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   2.1  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    27   2.8  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    26   3.7  

>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 471 NVCRYTVVKLI*KAQLINSYILIALLASSPTTDDNENSYHF 593
           N+CR T + +   +Q +   I   L  SSP +DD E  Y+F
Sbjct: 369 NICRSTRLYIPLSSQFLEM-IPFVLRRSSPLSDDKEVMYNF 408


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/52 (21%), Positives = 27/52 (51%)
 Frame = -1

Query: 473 VVGRKCTQILVLTVS*FLRWFSWSLYLFYVNSTYSTRPVGYFFKSLLNCKVL 318
           ++ + C QI+ L++   ++W +W +Y   +N       + + +  ++ C VL
Sbjct: 17  ILAKYCMQIIALSLMSGVQWLAWGIY--KINKNRVGIIILFLYIMIVTCYVL 66


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +1

Query: 58  PIFFKFDVFIFNMIVNS**LI*DDSMYIIFKNTIKISLIPKISSNPNYFYGGEWK 222
           PI   + +    MI++      DDS+Y +F   ++ S+I   S  P+    G W+
Sbjct: 244 PILLSYALSFILMILSHICNSLDDSLYRLFCIYLRFSMIDPTSGFPSSTASGNWE 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,345
Number of Sequences: 5004
Number of extensions: 44123
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)