Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0734
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80030-3|AAG24160.2|  367|Caenorhabditis elegans Serpentine rece...    31   0.65 
Z82276-6|CAJ15166.1|  305|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>U80030-3|AAG24160.2|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein115 protein.
          Length = 367

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
 Frame = -1

Query: 509 FSYKFDDRVPTYVVGRKCTQILVLTVS*FLRWFS-WSL-YLFYVNSTYSTRPVGYFFKSL 336
           +SY F D  PTY  G + T++L+  V  + R  S W + ++ ++ +     P+   F++L
Sbjct: 96  YSYIFFDCYPTYTYGLELTKVLLDVVRDYSRRCSTWLIVFIAFIRTLIVRNPMSTKFEAL 155

Query: 335 LNCKVLAGAIRI 300
             C+  A AI I
Sbjct: 156 --CQPKASAIII 165


>Z82276-6|CAJ15166.1|  305|Caenorhabditis elegans Hypothetical
           protein K03D3.12 protein.
          Length = 305

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 444 KYLCTLPSYNVCR---YTVVKLI*KAQLINSYILIALLASSPTTDDNENSYHF 593
           KY+C +      +   YTVVK I     I SY+ I L AS   T  +E+ + F
Sbjct: 43  KYICKINEEQDSQDKLYTVVKQIFAMVRIYSYLFIPLTASVYMTSVSESGFFF 95


>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
 Frame = -1

Query: 416 WFSWSLYLFYVNST-----YST-RPVGYFFKSLLNCKVL 318
           WF W   L Y+NS+     YST  PV  F  +L++ K++
Sbjct: 478 WFHWFTALGYLNSSLNFFIYSTINPVSIFISNLISKKII 516


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,360,534
Number of Sequences: 27780
Number of extensions: 235687
Number of successful extensions: 421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)