Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0731
         (421 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55375-4|AAC69042.3|  287|Caenorhabditis elegans Lim domain fami...    29   1.4  
Z70683-6|CAA94591.2|  512|Caenorhabditis elegans Hypothetical pr...    29   1.8  
X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin pr...    28   3.1  
AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin ...    28   3.1  
AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin ...    28   3.1  
AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine re...    26   9.5  

>U55375-4|AAC69042.3|  287|Caenorhabditis elegans Lim domain family
           protein 6 protein.
          Length = 287

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 403 LRCHCCQCRIYKYNKIFNKH 344
           LRC CCQ  +  + K F++H
Sbjct: 44  LRCSCCQLSLSSFKKCFSRH 63


>Z70683-6|CAA94591.2|  512|Caenorhabditis elegans Hypothetical
           protein F13B12.2 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 37  TGLA*LFLNEFLSLAGIRGVKLCMNCFILII*CFYSSSNVY*STPY 174
           TGLA  F   +L     + +K  M+CF+ I  CF SS     S P+
Sbjct: 152 TGLACAFAPLYLQQIIPKNIKGSMSCFLHIAVCFGSSLGAIFSLPF 197


>X56213-1|CAA39670.1| 1651|Caenorhabditis elegans vitellogenin
            protein.
          Length = 1651

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 132  LNYQNETVHTQLHSPYSRQRKKFVQK 55
            +NY   T+H  ++   S+++KKFV++
Sbjct: 1180 MNYGENTIHININGQQSQEQKKFVKQ 1205


>AF047659-3|AAC04423.2| 1650|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 6, isoform
            a protein.
          Length = 1650

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 132  LNYQNETVHTQLHSPYSRQRKKFVQK 55
            +NY   T+H  ++   S+++KKFV++
Sbjct: 1180 MNYGENTIHININGQQSQEQKKFVKQ 1205


>AF047659-2|AAQ91901.1| 1651|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 6, isoform
            c protein.
          Length = 1651

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 132  LNYQNETVHTQLHSPYSRQRKKFVQK 55
            +NY   T+H  ++   S+++KKFV++
Sbjct: 1180 MNYGENTIHININGQQSQEQKKFVKQ 1205


>AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein54 protein.
          Length = 328

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 281 IIP*SVLLTYKFHFISLYSSKMFVKYFI 364
           +I  S L T+KFH+    S+ +FV YF+
Sbjct: 116 VIHNSSLATHKFHWYLTISAIIFVLYFV 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,272,181
Number of Sequences: 27780
Number of extensions: 141143
Number of successful extensions: 265
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)