Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0730
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    27   1.3  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.0  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   5.3  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    25   7.0  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 390  QLIEPVKFNNIRIPHFFPIK*EKESFCKIC 479
            Q+++P+K + I +P F   K    SFC +C
Sbjct: 1427 QILKPLKLDGIDLPSFTEEKVSFVSFCCVC 1456


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 518 LLPKAHNGNIDPFTNFTKAF 459
           LLP      IDPFT F KAF
Sbjct: 161 LLPSMVREGIDPFTIFAKAF 180


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = -1

Query: 134  FHHVSLLHNTYFRIAPDLRT--DHRHGTEAYSIIRV 33
            FH  SL HN    + P  RT  +H+   + Y  + +
Sbjct: 1103 FHGQSLTHNNLIAVTPPSRTGVEHKEENKKYDNVNI 1138


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 163 KSRLKILFFFSIMFHCYIT-LILEL 92
           K RL+IL  FS++F C +  L L+L
Sbjct: 322 KHRLEILSLFSVLFTCIVAGLFLKL 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,627
Number of Sequences: 5004
Number of extensions: 42235
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)