Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0730
(527 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34159| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_25241| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-09) 30 1.4
SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24) 30 1.4
SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35) 28 4.1
SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17) 28 4.1
SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5) 28 4.1
SB_55834| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_28448| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
>SB_34159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = -2
Query: 175 RFVKKSRLKILFFFSIMFHCYITLILELLQT 83
R V K R +IL FFSI+ C I + EL QT
Sbjct: 776 RLVPKRRFRILCFFSIVAICIIMVWTELHQT 806
>SB_25241| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-09)
Length = 344
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 1 QEFGTRISYIKTLMIEYASVPCLWSVRKSGAILK*VLCNSE 123
Q G + ++K+ I+Y WS KSG + K L NS+
Sbjct: 285 QGLGRKRWFVKSYTIDYTMDEASWSEYKSGGVAKVFLANSD 325
>SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)
Length = 428
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 1 QEFGTRISYIKTLMIEYASVPCLWSVRKSGAILK*VLCNSE 123
Q G + ++K+ I+Y WS KSG + K L NS+
Sbjct: 285 QGLGRKRWFVKSYTIDYTMDEASWSEYKSGGVAKVFLANSD 325
>SB_54107| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.4e-35)
Length = 479
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 184 PTTRFVKKSRLKILFF-FSIMFHCYITLILELLQTYELTTDTAQR 53
P F R ++LFF F+++ C++ ++L L Y L D+ +R
Sbjct: 181 PDVTFTLHLRRRVLFFLFNLIIPCFVIVVLTSLSFY-LPPDSGER 224
>SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)
Length = 655
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 148 ILFFFSIMF---HCYITLILELLQTYELTTDTAQRHTRS*EF*YTISSCRIP 2
+LF F+ F HC+ ++ + Q +LT D ++ + +F YT++ +P
Sbjct: 462 LLFIFTFAFYVWHCFCSVTAKYQQLLKLTFDHSKEKDGNKDFIYTLNEKGVP 513
>SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5)
Length = 691
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = -3
Query: 396 SVDRHSHDDCSVVI*SINTRQFPYFNDLKK*HLT 295
S D H VV SI TRQ PYF D+ HLT
Sbjct: 88 SADAHEVTSHDVVAFSIQTRQSPYF-DVFSDHLT 120
>SB_55834| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 181 TTRFVKKSRLKILFFFSIMFHCYITLILELLQTYELTT 68
TT FV S + F +M H Y+T + +L + LTT
Sbjct: 11 TTMFVMMSNHYLTTMFVMMSHHYLTTMFVMLSHHYLTT 48
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 181 TTRFVKKSRLKILFFFSIMFHCYITLILELLQTYELTT 68
TT FV S + F IM H Y+T + ++ + LTT
Sbjct: 47 TTMFVMMSHHYLTTMFVIMSHHYLTTMFVIMAHHYLTT 84
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 181 TTRFVKKSRLKILFFFSIMFHCYITLILELLQTYELTT 68
TT FV S + F IM H Y+T + ++ + LTT
Sbjct: 59 TTMFVIMSHHYLTTMFVIMAHHYLTTMFVIMSHHYLTT 96
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 181 TTRFVKKSRLKILFFFSIMFHCYITLILELLQTYELTT 68
TT FV S + F IM H Y+T + ++ + LTT
Sbjct: 83 TTMFVIMSHHYLTTMFVIMSHHYLTTMFVIMSHHYLTT 120
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = -1
Query: 443 GEKMGNSYVIKFHRLYQLIDIH---MMIVP 363
GE+ G S+V K +LYQ+ IH MM+ P
Sbjct: 2141 GEEQGGSWVEKVLQLYQICQIHHGLMMVGP 2170
>SB_28448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1333
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 402 ALSVDRHSHDDCSVVI*SINTRQFPYFNDL 313
A SVD HD CS++ RQ + DL
Sbjct: 1178 ASSVDESGHDGCSLITKETGNRQLVFNRDL 1207
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,343,440
Number of Sequences: 59808
Number of extensions: 296137
Number of successful extensions: 507
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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