Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0730
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55770.1 68418.m06951 DC1 domain-containing protein contains ...    29   1.9  
At4g12140.1 68417.m01928 zinc finger (C3HC4-type RING finger) fa...    27   7.8  

>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 695

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 348 YFKLPRNNHHVNVD----QLIEPVKFNNIRIPHFFPIK*EKESFCKICE 482
           +++  + N+ V +D     +IEP  +     P F P + EKE+ C++C+
Sbjct: 476 FYECGKENNIVQLDLRCASIIEPFDYQGHEHPLFLPWETEKETRCQMCK 524


>At4g12140.1 68417.m01928 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 finger proteins
           RHG1a [Arabidopsis thaliana] GI:3822225, RHY1a
           [Arabidopsis thaliana] GI:3790593; contains Pfam profile
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 202

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 237 KYFHLEKSKSRQHICMLLSTLNVISLSH*NMETGEC 344
           +Y H+E++ S++   + L ++    L   NMET  C
Sbjct: 118 QYVHVEETSSKESRMVRLGSMKAEELKSFNMETDSC 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,851,875
Number of Sequences: 28952
Number of extensions: 204465
Number of successful extensions: 328
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)