Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0729
         (581 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    27   1.5  
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po...    27   1.5  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   6.1  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.1  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   8.1  

>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 177 DEHAQQFTGSLSFTNSARSKTGTRNDSFA-IMMHNKLTRLSENTERRL 37
           +EH +++  S +F N    + GTR D  + +  + K  RL +  E+RL
Sbjct: 200 EEHPERYKLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRL 247


>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 218

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = -3

Query: 219 IRILKGSLHSGFTLDEHAQQFTGSLSFTNSARSKTGTRNDSFAIMMHNKLTRLSENTERR 40
           +R +  SLH    +D++  +   +    +   SK+G  + S AI  ++ L R+ E+ ER 
Sbjct: 109 VRKVLQSLHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERH 168

Query: 39  LSFARN 22
                N
Sbjct: 169 KRMREN 174


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 213 ILKGSLHSGFTLDEHAQQFTGSLSFT 136
           ++  SLH+ F  + HA   TG LS T
Sbjct: 897 VVVNSLHNYFFAEAHASSVTGVLSIT 922


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 159 FTGSLSFTNSARSKTGTRNDSFAIMMHNKLTRLS 58
           F GSL FT+  R+KT      F+++  +KL + +
Sbjct: 730 FKGSLLFTDDKRNKTEDSTVFFSMICSSKLDQFA 763


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 577 QNLTCTVVITNWIYFNKRRLRGASNRAIVLPMVAAPL 467
           Q+  CT+  TNWI  N     G   R I L  V A +
Sbjct: 462 QSPMCTMKDTNWIRRNMHLQFGPLKRQIFLTQVKADI 498


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,277
Number of Sequences: 5004
Number of extensions: 43539
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)