Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0729
         (581 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12)              28   4.8  
SB_22531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_16031| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.0  

>SB_14351| Best HMM Match : zf-B_box (HMM E-Value=2.3e-12)
          Length = 549

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 366 PGKRQDDFEVGCPTSRNEANEVNLFCQTCDYDGCN 470
           P KR+   E+ C    +E+N +N FC  CD   C+
Sbjct: 149 PSKRKQTDEICCHI--HESNPLNRFCVECDLAVCS 181


>SB_22531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 245 RLENCDKNAGATFPYLTASKSVCKKEKKYIDGE 343
           R ++CDK  G T   L    SVCK++K YI+ E
Sbjct: 444 RCKDCDKRFG-TKRSLFGHLSVCKRKKGYINEE 475


>SB_16031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 25.4 bits (53), Expect(2) = 9.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 204 GSLHSGFTLDEHAQQFTGSLSFTNSARSKTGTRND 100
           GSLH+G T  +H+    G      +    TG +++
Sbjct: 34  GSLHTGLTPAQHSASIVGPAMLAGAGAVYTGLKSE 68



 Score = 20.6 bits (41), Expect(2) = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 366 VQPRLTTNSPSMYFFSFLHT 307
           V+  L TN P+M  +  LHT
Sbjct: 19  VKRELITNMPAMCCWGSLHT 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,800,620
Number of Sequences: 59808
Number of extensions: 353653
Number of successful extensions: 755
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)