Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0727
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    31   0.16 
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    29   0.37 
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    26   4.5  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   6.0  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    25   7.9  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.9  

>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 51  NFEELLPSTAIAKQVESVVSQPEQATAPLPAPLADSHL 164
           N EE+ PS+ I K V+S +   E   +P+  PL++  +
Sbjct: 122 NAEEIAPSSLINKAVQSTLRLSEPLVSPIKCPLSEQFI 159


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 387 TPRDDAPDFRDLNANVSVHCRVSETSSTLNQPIMTPVEMPTKADS 521
           T  D+       N ++++HC   +  S +N P   PVE+  K DS
Sbjct: 90  TDEDELSLIDKYNFSITIHCE-EQLKSFMNYPFKKPVEVHLKLDS 133


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 267 LENNQLVPMAV-EPLQVIAPQPERRDILEAALANSD 371
           + NN+++P  V   ++++  QP+  D+ E+A  NS+
Sbjct: 78  ISNNKMLPYLVGNVVEILDMQPDEVDVQESANQNSE 113


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 450 VSETSSTLNQPIMTPVEMPTKADSEPTVPSNLEDGLAVIG 569
           +S  S  + +P    V MP K D +  +PS+     AVIG
Sbjct: 116 ISSKSENVPEPAGEKVSMPEKQDLQSALPSDAVSN-AVIG 154


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = +3

Query: 285 VPMAVEPLQVIAPQPERRDILEAALANSDVFHADTPRDDAPDFRDLNANVSVHCR 449
           VP    P+++   Q   RD LEAAL      H +    D   F      +   CR
Sbjct: 249 VPGRTYPVEIYYTQEPERDYLEAALRTVLQIHVEEGPGDILVFLTGEEEIEDACR 303


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 219 VEDNGTLTPIDNRPLILENNQLVPMAVEPLQVIAPQPERRDI 344
           +ED+ ++   D  P+I E  ++   A  P  +I P+P+ R +
Sbjct: 756 MEDDDSVEEFD--PIIEERQRMKRKANRPANIIPPKPKLRTV 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,295
Number of Sequences: 5004
Number of extensions: 47638
Number of successful extensions: 155
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)