Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0727
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668... 32 0.28
03_01_0217 - 1712979-1713794 29 2.0
12_01_0419 - 3316866-3318172,3318249-3318360 28 4.6
03_02_0789 + 11207769-11208059,11208370-11208557,11208701-112097... 28 6.1
09_01_0082 - 1182976-1182989,1183044-1183347,1184259-1184357,118... 27 8.1
05_03_0476 + 14499226-14499381,14499726-14499750,14500388-145007... 27 8.1
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076... 27 8.1
01_05_0569 + 23343861-23344751,23344841-23344984,23345071-233453... 27 8.1
>04_03_0961 +
21263735-21263773,21264157-21264279,21266774-21266847,
21266939-21267095,21267554-21267694,21267739-21267823,
21268810-21268903,21269041-21269239,21269515-21269549,
21270076-21270631,21270722-21270882,21271704-21271718,
21273078-21273330,21273439-21273562,21273688-21273788,
21274870-21274938,21275060-21275191,21275270-21275404,
21275489-21275551,21275636-21275881,21276007-21276285
Length = 1026
Score = 32.3 bits (70), Expect = 0.28
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 219 VEDNGTLTPIDNRPLILENNQLVPMAVEPLQVI 317
+ + TP++ PL + +N+L PM +EPL I
Sbjct: 378 IASSNEFTPMNVEPLNVSSNELTPMTIEPLNAI 410
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 219 VEDNGTLTPIDNRPLILENNQLVPMAVEPLQV 314
+ + TP++ P I +N+ PM VEPL V
Sbjct: 363 IASSSEFTPMNVEPSIASSNEFTPMNVEPLNV 394
>03_01_0217 - 1712979-1713794
Length = 271
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 77 RNSKASRECGIATRTGHCAATGSPR-RQSPVG 169
R +K R+CG R GHC T +P+ R P G
Sbjct: 174 RPAKRRRKCGEEKRCGHCQTTETPQWRVGPDG 205
>12_01_0419 - 3316866-3318172,3318249-3318360
Length = 472
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 432 VSVHCRVSETSSTLNQPIMTPVEMPTKADSEPTVPSNLEDGLAVIGV 572
V + C V + P+ TP+E+ +EP PS++ D + ++ V
Sbjct: 252 VDIECDVVFEPAYRELPVETPIEVVGPPHAEPEPPSDVPDPIDILCV 298
>03_02_0789 +
11207769-11208059,11208370-11208557,11208701-11209785,
11210163-11210288,11210367-11210605,11210688-11210806,
11210894-11211014
Length = 722
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = +3
Query: 285 VPMAVEPLQVIAPQPERRDILEAALANSDVFHADTPRDDAPDFRDLNANVSVHCR 449
VP + P+++ Q RD LEAA+ H P D F + CR
Sbjct: 238 VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACR 292
>09_01_0082 -
1182976-1182989,1183044-1183347,1184259-1184357,
1184458-1184595,1184698-1184820,1184962-1185030
Length = 248
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 89 ASRECGIATRTGHCAATGSPR 151
++R+CG G+CAATG R
Sbjct: 30 SARDCGAGLYCGNCAATGKTR 50
>05_03_0476 +
14499226-14499381,14499726-14499750,14500388-14500734,
14501608-14501886
Length = 268
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 459 TSSTLNQPIMTPVEMPTKADSEPTVPSNLED 551
T+S + + T V PT+++S P P L+D
Sbjct: 13 TTSAMERSNSTGVSFPTRSESSPPSPMELDD 43
>03_06_0448 - 34005581-34005655,34005735-34005830,34006669-34007616,
34007684-34007851,34007908-34008099,34008164-34008346,
34008414-34008590,34008667-34012074
Length = 1748
Score = 27.5 bits (58), Expect = 8.1
Identities = 26/114 (22%), Positives = 45/114 (39%)
Frame = +3
Query: 222 EDNGTLTPIDNRPLILENNQLVPMAVEPLQVIAPQPERRDILEAALANSDVFHADTPRDD 401
+D GT +NR L N VEP + E ++ + D F + ++D
Sbjct: 1384 QDQGTEN--ENRNQNLVNTDSFECGVEPHGTLKTTHETLPTVQVVSTSGDTFSSKNEQND 1441
Query: 402 APDFRDLNANVSVHCRVSETSSTLNQPIMTPVEMPTKADSEPTVPSNLEDGLAV 563
P + D N + VSE++ T + + P D E N+E+ + +
Sbjct: 1442 VP-WEDQNKS---DAEVSESNQTAPKESERTIP-PEHEDREEEKEENMENKIEI 1490
>01_05_0569 +
23343861-23344751,23344841-23344984,23345071-23345309,
23346096-23346185,23346617-23346644
Length = 463
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 219 RISKKNQAVLRMVLRAPPTGDCRRGEPVAAQW-PVLVAIP 103
RIS+ A+LR V+ PT D R ++++W V +IP
Sbjct: 43 RISRLPDALLRRVVSRLPTKDAARTAAISSRWRRVWASIP 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,078,764
Number of Sequences: 37544
Number of extensions: 359361
Number of successful extensions: 1177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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