Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0727
         (577 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39)          29   3.6  
SB_57084| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_43312| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +3

Query: 321 PQPERRDILEAALANSDVFHADTPRDDAPDFRDLNANVSVHCRVSETSSTLNQP-IMTPV 497
           P    +DI  A   N D+ HA +   D      +N N++  C V++ +S    P I T V
Sbjct: 227 PGSVNQDIRHAVSINQDICHAGSVNQDIRHAVFVNQNINHACSVNKKTSVTQFPSIKTSV 286

Query: 498 -EMPTKADSEPTVPS 539
            ++P+   S   VPS
Sbjct: 287 TQVPSIKTSVTQVPS 301


>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 399 DAPDFRDLNANVSVHCRVSETSSTLNQPIMTPVEMPTKAD 518
           D P     N N+ +  R    + TLN+PI  P    TKA+
Sbjct: 739 DGPLSNSYNTNIPIPSRYQLITPTLNKPIQIPDLSDTKAE 778


>SB_9200| Best HMM Match : Peptidase_A17 (HMM E-Value=4.4e-39)
          Length = 1607

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 25/81 (30%), Positives = 34/81 (41%)
 Frame = +3

Query: 285  VPMAVEPLQVIAPQPERRDILEAALANSDVFHADTPRDDAPDFRDLNANVSVHCRVSETS 464
            VP A +P +VIA  PE     +     + +      RDD     D+ A V+   R    S
Sbjct: 818  VPAAFQPTEVIAGSPEEPWAEKYKFGWTVIGRVCKDRDD-----DVTARVNCVTREKSYS 872

Query: 465  STLNQPIMTPVEMPTKADSEP 527
            ST  Q I+ P   P+ A   P
Sbjct: 873  STTLQAIL-PYSRPSSARHHP 892


>SB_57084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 198 AVLRMVLRAPPTGDCRRGEPVAAQWP 121
           A L MVL  PP+  C  G+P+  + P
Sbjct: 7   ACLVMVLHVPPSNSCSPGDPLVLERP 32


>SB_43312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 372 VFHADTPRDDAPDFRDLNANVSVHCRVSETS-STLNQPIMTPVEMPTKADSEPTVPSNLE 548
           +++     D   D+ D ++  SV   V E+    + +P++  +E      +   VPSN+ 
Sbjct: 5   IWYQSLTADARKDWGDKHSGQSVEAGVQESLVKYVGRPLVKVMEYLENEHARHCVPSNIS 64

Query: 549 DGLAVI 566
            GLA +
Sbjct: 65  SGLATL 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,238,898
Number of Sequences: 59808
Number of extensions: 393108
Number of successful extensions: 1653
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1653
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)