Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0727
         (577 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128809-1|BAC87616.1|  404|Homo sapiens protein ( Homo sapiens ...    31   3.8  
AY158091-1|AAN46899.1|  346|Homo sapiens oocyte-specific histone...    29   8.9  
AK130563-1|BAC85380.1|  158|Homo sapiens protein ( Homo sapiens ...    29   8.9  

>AK128809-1|BAC87616.1|  404|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45978 fis, clone PROST2007444. ).
          Length = 404

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
 Frame = -2

Query: 336 CAQVEERLLVKAPPPWGQADCFLKSMADCR*A*ECHY-LQRISKKNQAVLRMVLRA---- 172
           CA VE RLL   P  W  A    ++ A+C  A  C   +   S       R++ RA    
Sbjct: 98  CADVECRLLTHVPM-WS-ARLLTRADAECPPAHTCRCGVPACSHVPMRSARLLTRAHAEC 155

Query: 171 PPTGDCRRGEPVAAQWP 121
           PP   CRRG P  +  P
Sbjct: 156 PPAHTCRRGVPACSHVP 172


>AY158091-1|AAN46899.1|  346|Homo sapiens oocyte-specific histone H1
           protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 8.9
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 216 ISKKNQAVLRMVLRAPPTGDCRRGEPVAA 130
           + +++  VLRMVL A   G+ RRG  VAA
Sbjct: 48  VGRRHPPVLRMVLEALQAGEQRRGTSVAA 76


>AK130563-1|BAC85380.1|  158|Homo sapiens protein ( Homo sapiens
           cDNA FLJ27053 fis, clone SPL00486. ).
          Length = 158

 Score = 29.5 bits (63), Expect = 8.9
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 101 CGIATRTGHCAATGSPRRQS 160
           CGI TRT HC  TG  R Q+
Sbjct: 125 CGIDTRTDHCNQTGQKRVQN 144


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,754,894
Number of Sequences: 237096
Number of extensions: 1886609
Number of successful extensions: 5193
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5193
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)