Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0727
         (577 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19450.1 68415.m02272 diacylglycerol O-acyltransferase / acyl...    31   0.73 
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5...    29   1.7  
At5g04410.1 68418.m00433 no apical meristem (NAM) family protein...    28   5.1  
At4g36860.2 68417.m05227 LIM domain-containing protein low simil...    27   6.8  
At4g36860.1 68417.m05226 LIM domain-containing protein low simil...    27   6.8  
At4g27595.1 68417.m03964 protein transport protein-related low s...    27   6.8  
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5...    27   6.8  
At5g12230.1 68418.m01435 expressed protein                             27   9.0  
At3g15240.1 68416.m01925 expressed protein                             27   9.0  
At2g43620.1 68415.m05422 chitinase, putative similar to basic en...    27   9.0  

>At2g19450.1 68415.m02272 diacylglycerol O-acyltransferase / acyl
           CoA:diacylglycerol acyltransferase (DGAT) identical to
           gi:5050913, gi:6625553
          Length = 520

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 482 NNDAGRDANKGRQRADRTVEFRRRLSGHRR 571
           NN  GR   +GR  AD T  +R  +  HRR
Sbjct: 87  NNGGGRGGGEGRGNADATFTYRPSVPAHRR 116


>At2g47250.1 68415.m05900 RNA helicase, putative similar to
           SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
           (Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 729

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
 Frame = +3

Query: 285 VPMAVEPLQVIAPQPERRDILEAALANSDVFHADTPRDDAPDFRDLNANVSVHCR-VSET 461
           VP  + P+++   Q   RD LEAA+      H   P  D   F      +   CR +++ 
Sbjct: 243 VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKE 302

Query: 462 SSTLNQPIMTPVEMPTKADSEPTVPSNLED 551
            S L   +     +P  +   P +   + D
Sbjct: 303 VSNLGDQVGPVKVVPLYSTLPPAMQQKIFD 332


>At5g04410.1 68418.m00433 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) protein;
           supporting cDNA gi|6456750|gb|AF201456.1|AF201456
          Length = 567

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +3

Query: 249 DNRPLILENNQLVPMAVEPLQVIAPQPERRDILEAALANSDVFHADTPRDDAP 407
           D +P+I E + + P ++ P + I    +  +++    +N++VF ADT   D P
Sbjct: 273 DRKPIIREGS-IQPCSLFPEEQIGCGVQDENVVNLESSNNNVFVADTCYSDIP 324


>At4g36860.2 68417.m05227 LIM domain-containing protein low
           similarity to LIM-domain protein [Branchiostoma
           floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
           GI:7209525; contains Pfam profile PF00412: LIM domain
          Length = 547

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 213 LCVEDNGTLTPIDNRPLILENNQLVPMAVEPLQVI 317
           LC+ +  T+T +  RP I    +L+ M  EP ++I
Sbjct: 369 LCLSEEQTVTTVLRRPRIGAGYKLIDMITEPCRLI 403


>At4g36860.1 68417.m05226 LIM domain-containing protein low
           similarity to LIM-domain protein [Branchiostoma
           floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
           GI:7209525; contains Pfam profile PF00412: LIM domain
          Length = 351

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 213 LCVEDNGTLTPIDNRPLILENNQLVPMAVEPLQVI 317
           LC+ +  T+T +  RP I    +L+ M  EP ++I
Sbjct: 173 LCLSEEQTVTTVLRRPRIGAGYKLIDMITEPCRLI 207


>At4g27595.1 68417.m03964 protein transport protein-related low
            similarity to SP|P25386 Intracellular protein transport
            protein USO1 {Saccharomyces cerevisiae}
          Length = 1212

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 48   ENFEELLPSTAIAKQVESVVSQPEQATAPLP 140
            ENF++L    ++A+Q E VVS+ +Q     P
Sbjct: 1165 ENFDQLSNGLSLAEQTEDVVSKDQQQKKKKP 1195


>At3g62310.1 68416.m07000 RNA helicase, putative similar to
           SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
           (Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 726

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = +3

Query: 285 VPMAVEPLQVIAPQPERRDILEAALANSDVFHADTPRDDAPDFRDLNANVSVHCR 449
           VP  + P+++   Q   RD LEAA+      H   P  D   F      +   CR
Sbjct: 239 VPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACR 293


>At5g12230.1 68418.m01435 expressed protein 
          Length = 221

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 450 VSETSSTLNQPIMTPVEMPTKADSEPTVPS 539
           + E   +     MTPVE+P      PT+PS
Sbjct: 87  IDELQESFQLNDMTPVELPPAEKGAPTIPS 116


>At3g15240.1 68416.m01925 expressed protein 
          Length = 251

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 207 FYLC-VEDNGTLTPIDNRPLILENNQLVPMAVEPLQVIAP 323
           FYL  +  +   T   N PL+  N+ L+P   +PLQ   P
Sbjct: 103 FYLSQLFSSNRTTSSSNTPLMASNHPLLPTQTQPLQPTLP 142


>At2g43620.1 68415.m05422 chitinase, putative similar to basic
           endochitinase CHB4 precursor SP:Q06209 from [Brassica
           napus]
          Length = 283

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 101 CGIATRTGHCAATGSPRRQSPVGGA 175
           CG   R+G C+++ +P   +P GGA
Sbjct: 55  CGTGCRSGPCSSSTTPIPPTPSGGA 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,323,784
Number of Sequences: 28952
Number of extensions: 261961
Number of successful extensions: 684
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)