Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0726
         (585 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    45   5e-07
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    22   4.4  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   5.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 44.8 bits (101), Expect = 5e-07
 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 5/132 (3%)
 Frame = +3

Query: 204 NVHGEAKAVISLQIKVKDISSTEEAHHIRYGRVEVLPRFERNLTDMLSCDGDTVEFECQV 383
           +V  E K +    I+  D  S E    ++ G     P+      +     G++V  +C  
Sbjct: 379 SVRKEDKGMYQCFIR-NDQESAEATAELKLGGRFEPPQIRHAFNEETVQPGNSVFLKCIA 437

Query: 384 TGNPDPDIRWFHYAEVI-----RDCADFESSYDDGTARLKIKQVTAEDEGTYTCEASNCL 548
           +GNP P+I W  Y   +          + +   D  + L I  +   D G Y C AS+ +
Sbjct: 438 SGNPTPEITWELYGRRLSNSERNQIGQYVTVNGDVVSHLNITAIHTNDGGLYRCVASSKV 497

Query: 549 GKAKSNACLVVY 584
           G A  +A + VY
Sbjct: 498 GSADHSARINVY 509



 Score = 41.9 bits (94), Expect = 4e-06
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
 Frame = +3

Query: 300 VEVLPRFERNLTDMLSCDGDTVEFECQVTGNPDPDIRWFHYAEVI-RDCADFESS----- 461
           + V PR+    TD     G     EC+  G P P + W     V   D  DF+ +     
Sbjct: 695 INVPPRWILEPTDKAFAQGSDAAVECKADGFPRPVVTWKRATGVSPGDYKDFKPNNPDIK 754

Query: 462 YDDGTARLKIKQVTAEDEGTYTCEASNCLGKAKS 563
            +DGT  L I  +   +EG Y CEA N +G   S
Sbjct: 755 VEDGT--LTINNIQKTNEGYYLCEAVNGIGSGLS 786



 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
 Frame = +3

Query: 375 CQVTGNPDPDIRWFHYAE--VIRDCADFESSYDDGTARLKIKQVTAEDEGTYTCEASNCL 548
           C   G P P  RW+ + E    +               L I++   ED G Y C  +N +
Sbjct: 254 CPAQGFPSPSFRWYKFVEGTTRKQAVTLNDRVKQVAGTLIIREAKVEDSGKYLCVVNNSV 313

Query: 549 GKAKSNACLVV 581
           G       L V
Sbjct: 314 GGESVETVLTV 324



 Score = 33.1 bits (72), Expect = 0.002
 Identities = 46/198 (23%), Positives = 77/198 (38%), Gaps = 7/198 (3%)
 Frame = +3

Query: 9    GTRVIIECEVVGDPKPDVYWLRDF-LKPDYYRDATHFKRVGDGPEYRFEIPHAKLNYTGA 185
            G+   +EC+  G P+P V W R   + P  Y+D   FK   + P+ + E     +N    
Sbjct: 713  GSDAAVECKADGFPRPVVTWKRATGVSPGDYKD---FKP--NNPDIKVEDGTLTIN---- 763

Query: 186  YSVVARNVHGEAKAVISLQIKVKDISSTEEAHHIRYGRVEVLPRFERNLTDMLSCDGDTV 365
                  N+    +     +  V  I S   A  +    V+  P+F+  L +  S  GD  
Sbjct: 764  ------NIQKTNEGYYLCEA-VNGIGSGLSA--VIQISVQAPPQFDIKLRNQTSRRGDPA 814

Query: 366  EFECQVTGNPDPDIRWFHYAEVIRDCAD-----FESSYDDGT-ARLKIKQVTAEDEGTYT 527
              +C+  G     I W    + +    D      E    +G  + L IK+    D   +T
Sbjct: 815  VLQCEAKGEKPIGILWNINNKRLEPKGDNRYTIREEILANGVLSGLSIKRTERSDSALFT 874

Query: 528  CEASNCLGKAKSNACLVV 581
            C A+N  G   ++  ++V
Sbjct: 875  CVATNAFGSDDTSINMIV 892



 Score = 30.3 bits (65), Expect = 0.013
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 12  TRVIIECEVVGDPKPDVYWLR 74
           T  ++EC   G+P PD+ W+R
Sbjct: 39  TGAVVECSAHGNPTPDIIWVR 59



 Score = 30.3 bits (65), Expect = 0.013
 Identities = 22/72 (30%), Positives = 27/72 (37%)
 Frame = +3

Query: 354 GDTVEFECQVTGNPDPDIRWFHYAEVIRDCADFESSYDDGTARLKIKQVTAEDEGTYTCE 533
           G    F C   GNP   I W      I          D   A L+I+ V  ED+G Y C 
Sbjct: 342 GRPATFTCNFEGNPIKTISWLKDGHPI----------DHNEAVLRIESVRKEDKGMYQCF 391

Query: 534 ASNCLGKAKSNA 569
             N    A++ A
Sbjct: 392 IRNDQESAEATA 403



 Score = 27.1 bits (57), Expect = 0.12
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = +3

Query: 306 VLPRFERNLTDMLSCDGDTVEFECQVTGNPDPDIRW 413
           V  R   N  D  +  G  VE  C   GNP PDI W
Sbjct: 24  VFVREPPNRIDFSNTTGAVVE--CSAHGNPTPDIIW 57



 Score = 27.1 bits (57), Expect = 0.12
 Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 3/184 (1%)
 Frame = +3

Query: 9   GTRVIIECEVVGDPKPDVYWLRDFLKPDYYRDATHFKR--VGDGPEYRFEIPHAKLNYTG 182
           G  V ++C   G+P P++ W        Y R  ++ +R  +G       ++  + LN T 
Sbjct: 428 GNSVFLKCIASGNPTPEITW------ELYGRRLSNSERNQIGQYVTVNGDVV-SHLNITA 480

Query: 183 AYSVVARNVHGEAKAVISLQIKVKDISSTEEAHHIRYGRVEVLPRFERNLTDMLSCDGDT 362
            ++    N  G  + V S ++   D S+        YG    LP F R++       G T
Sbjct: 481 IHT----NDGGLYRCVASSKVGSADHSARINV----YG----LP-FVRSMEKQAIVAGGT 527

Query: 363 VEFECQVTGNPDPDIRWFHYAEVIRDCADFESSYDDGTARLKIKQV-TAEDEGTYTCEAS 539
           +   C   G+P   + W      +      +  + +GT  L I+ V  A D+ TY C A 
Sbjct: 528 LIVHCPFAGHPVDSVVWERDGRQL-PINRKQKVFINGT--LIIENVERASDQATYDCVAK 584

Query: 540 NCLG 551
           N  G
Sbjct: 585 NSQG 588



 Score = 25.8 bits (54), Expect = 0.27
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = +3

Query: 351 DGDTVEFECQVTGNPDP-DIRWF---HYAEVIRDCADFESSYDDGTARLKIKQVTAEDEG 518
           +GD V  +C V+    P +I W    H+ +         +S    T  L I  V +   G
Sbjct: 617 EGDGVSVQCTVSKGDYPLNISWTLNGHFIDQTNGIVINRASKRVST--LSIDNVQSTHVG 674

Query: 519 TYTCEASN 542
            YTC ASN
Sbjct: 675 NYTCLASN 682


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
 Frame = +3

Query: 255 DISSTEEAHHIRYG---RVEVLPRFERNLTDMLSCDGDTVEFECQVTGNPDPD 404
           +I   +E + I  G   RV  L     NL  MLS  G T   +  V    DP+
Sbjct: 67  NIQVLDEENDINQGGLKRVSALKEKNPNLKVMLSVGGATASPDSFVAAANDPE 119


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 257 YKFDRRSTSHQIW 295
           Y F++ S  HQ+W
Sbjct: 27  YNFEKFSLEHQLW 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,905
Number of Sequences: 336
Number of extensions: 2841
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14621740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)