Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0726
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    31   0.16 
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    27   1.5  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   1.5  
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    27   1.5  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    27   2.0  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   2.7  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   2.7  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   2.7  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   4.7  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   8.1  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   8.1  

>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
 Frame = +3

Query: 27  ECEVVGDPKPDVYWLRDFLKPDY-YRDATHFKRVGDGPEYRFEIPHAKLNYTGAYSVVAR 203
           E + V +P P+ Y+L + + P Y Y     F+ + +G   R E PH +L      + +  
Sbjct: 404 EAQNVTEPVPEGYYLDNIVSPLYQYMHDQQFEII-NGKYVRRERPHDQLIGYDDINQLFW 462

Query: 204 NVHGEAKAVISLQIKVKDISSTEEAHHI 287
           +  G A+ +     ++ DI ++E  H +
Sbjct: 463 HAEGIARLIFEDGTRLIDIPASERFHRL 490


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/67 (17%), Positives = 28/67 (41%)
 Frame = +3

Query: 84  KPDYYRDATHFKRVGDGPEYRFEIPHAKLNYTGAYSVVARNVHGEAKAVISLQIKVKDIS 263
           KP+ +++  H  R  D   +R+++P   ++   A   ++      + +  +L +      
Sbjct: 191 KPNMHQNVLHNDRSADNLNHRYQVPPTLVDSNSAQGTLSPETPSSSDSPSNLYLNYPKRK 250

Query: 264 STEEAHH 284
           S    HH
Sbjct: 251 SITHLHH 257


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 461 RRLEVSAIPDHLSIMEPSNIRIGVASNLT 375
           ++ EV  IP   S+MEP NI     S LT
Sbjct: 153 KKAEVDIIPFDKSVMEPKNITFNDKSGLT 181


>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 457 DSKSAQSLITSA*WNHLISGSGLPVT*HSNSTVSPSQDNMSVRFRSNLGN 308
           D +  Q  I S  WN  +SGS L  +  S S +  + D +  +F + LGN
Sbjct: 19  DLQGQQGPIRSLGWN--LSGSRLASSSSSGSVLVWNSDRLDFKFTTELGN 66


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 150 EIPHAKLNYTGAYSVVARNVHGEAKAVISLQIKVKDISSTEE 275
           E+  +K   T     V+ NV+ E+ A IS  +  KD+  TEE
Sbjct: 378 ELVRSKTRLTSKNKTVS-NVYDESNATISSGVMQKDLRKTEE 418


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 515 FIFGGNLFDLQPRCTVVVRRLEVSAIPDHLSIMEPSNIRIGVASNL 378
           +IFGG   D QP+  + V  L  S      S+ E  + R+G AS L
Sbjct: 96  YIFGGVASDSQPKNDLWVLNLATSQFTSLRSLGETPSPRLGHASIL 141


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/67 (20%), Positives = 26/67 (38%)
 Frame = +3

Query: 315  RFERNLTDMLSCDGDTVEFECQVTGNPDPDIRWFHYAEVIRDCADFESSYDDGTARLKIK 494
            RF+    D+        +FE Q+  +P+  + W  Y     +  + + + + G   L   
Sbjct: 1411 RFDDEEKDLDEIPSTAADFERQLLSSPNSSLLWISYMAYHLNLNELQEAREVGKRALSTI 1470

Query: 495  QVTAEDE 515
                EDE
Sbjct: 1471 NYREEDE 1477


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/48 (22%), Positives = 26/48 (54%)
 Frame = -2

Query: 374 FELYCIAIARQHVGQVSFESW*HFDSPISDVMCFFCRTYIFNFDLKGD 231
           F+++   +++ H G+++ ++      P   ++C FCR  IF F  + +
Sbjct: 750 FDIFRTELSKNHTGEITRKA----TEPSIRIICNFCRKPIFPFSNRNE 793


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -3

Query: 469 SSYEDSKSAQSLITSA*WNHLISGSGLPVT*HSNSTVSPSQDNMSVRFRSNLGNTSTRP 293
           SS + S S+ S   S+  +   S S    +  S S+ SPS    S +F S+   TST P
Sbjct: 174 SSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTP 232


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 221  QSGHLPSDQS*RYKFDRRSTSHQIWASRSVTKIRTK 328
            +SG++ +D S   K  R + S +  A R++ K+R K
Sbjct: 2742 ESGNITTDASRDPKIQRNNVSGESEAERAILKVRQK 2777


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 111 HFKRVGDGPEYRFEIPHAKLNYT 179
           H  ++  G   R  +P+AKL+YT
Sbjct: 636 HSHQISGGHSGRMNVPYAKLSYT 658


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 22  SLSAKWLEIRSPTCIGSGTS*NRITTVTRLISNASE 129
           SL+ K + I S +CI  G   NRI+T+  L+++ +E
Sbjct: 389 SLNGKCINIVS-SCIFDGKPQNRISTMRILVAHTNE 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,995
Number of Sequences: 5004
Number of extensions: 49325
Number of successful extensions: 145
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)