Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0726
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0842 - 32138519-32138527,32138638-32139090 30 1.2
05_04_0244 - 19344418-19344483,19344961-19345029,19345355-193454... 30 1.6
09_04_0572 - 18632485-18632975,18633330-18633646,18633885-18634435 29 2.1
11_04_0472 - 18137307-18137542,18137660-18137933,18138182-181383... 29 3.6
09_03_0056 - 11936264-11939677 29 3.6
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002... 28 4.8
10_08_0974 + 21969713-21971914 28 6.3
09_04_0296 + 16461482-16461544,16462087-16463097 28 6.3
08_02_0802 + 21386248-21387468 28 6.3
01_01_0123 - 1142557-1142744,1143281-1143497 28 6.3
07_01_0845 + 6866211-6867143 27 8.3
02_04_0187 - 20757713-20758632,20759056-20759812 27 8.3
01_06_0848 + 32426550-32426613,32427013-32427167,32428470-324285... 27 8.3
>02_05_0842 - 32138519-32138527,32138638-32139090
Length = 153
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +1
Query: 1 RNSARGSSLSAKWLEIRSPTCIG--SGTS*NRITTVTRLISNASE 129
R SA+GSS + L +R P C+G +GT+ T T ++++ ++
Sbjct: 104 RASAKGSSRWKEMLGLRKPLCVGGVNGTAKKSTTVDTEMVTDVAD 148
>05_04_0244 -
19344418-19344483,19344961-19345029,19345355-19345420,
19345735-19345785,19345892-19346057,19346148-19346263
Length = 177
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -2
Query: 191 RVGSGIVQFRVRYLKSVLRPISDAFEMSRVTVVIRFQEVPEPIHVGLRISNHFALND 21
R G+G V F V+Y V RP + VT+V + E V + +SNH +D
Sbjct: 60 REGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDD 116
>09_04_0572 - 18632485-18632975,18633330-18633646,18633885-18634435
Length = 452
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -2
Query: 509 FGGNLFDLQPRCTVVVRRLEVSAIPDHLSIMEPSNIRI--GVASNLTFELYCIAIARQHV 336
+ G L+D +P C +V+ + +H+S +E N+R+ S +++ + V
Sbjct: 378 YSGGLYDYRPGCQKMVKHRTGGMMLEHISGLEIDNVRMRWSRGSLKGWDVDPLLFQPSTV 437
Query: 335 GQVSFESW 312
++SF W
Sbjct: 438 DKLSFHDW 445
>11_04_0472 -
18137307-18137542,18137660-18137933,18138182-18138303,
18139158-18139370,18139475-18139724
Length = 364
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -2
Query: 575 ETGIRLRFAEAVGSLTRVGAFIFGGNLFDLQPRCTVVVRRLEVSAIPDHLSIMEP 411
+TG LR AVG+ +G + +G L RC+ + ++ A+ +LS++ P
Sbjct: 40 DTGNLLREGPAVGAFASIGTYPYGQTLRRPTGRCSDGLLIIDYFAMALNLSLVSP 94
>09_03_0056 - 11936264-11939677
Length = 1137
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 451 SSLRTTTVQRG*RSNKLPPKMKAPTRVRLPTASAKRSRM 567
S+LR+ G ++ LPP + P +LPTASA+ S M
Sbjct: 103 SALRSAAA--GDPASSLPPYLLRPIAQKLPTASAQNSTM 139
>03_06_0523 +
34499533-34499705,34499808-34499917,34500037-34500224,
34500984-34501451
Length = 312
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 221 QSGHLPSDQS*RYKFDRRSTSHQIWASRSVTKIRTKPDRH 340
Q G S RY D + ++ W S+ +K R + DRH
Sbjct: 140 QKGECNRGASCRYSHDEQRNANTGWGSKEESKARWEHDRH 179
>10_08_0974 + 21969713-21971914
Length = 733
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 42 GDPKPDVYWLRDF 80
G+PKPD YWL+ F
Sbjct: 308 GEPKPDPYWLQTF 320
>09_04_0296 + 16461482-16461544,16462087-16463097
Length = 357
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 490 SNKLPPKMKAPTRVRLPTAS 549
S++LP K KAPT V LP AS
Sbjct: 235 SSRLPRKPKAPTAVPLPPAS 254
>08_02_0802 + 21386248-21387468
Length = 406
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +2
Query: 290 IWASRSVTKIRTKPDRHVVLRWRYSRVRM--SSYWQPRSGY 406
+W R + R DR V L W +R R S +P SG+
Sbjct: 92 LWRRRGTRRFRAAGDRRVDLAWDLTRARFPGSGSPEPSSGF 132
>01_01_0123 - 1142557-1142744,1143281-1143497
Length = 134
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 234 SLQIKVKDISSTEEAHHIRYGRVEVLPRFERNLTDMLSCDGD 359
S++ K+ D+ + +EAHHI R+E R DGD
Sbjct: 24 SIRGKLSDLDNQQEAHHIAIQRLERAGRERHQHPGDRDADGD 65
>07_01_0845 + 6866211-6867143
Length = 310
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 369 FECQVTGNPDPDIRWFHYAEVIRDCADFE 455
F +V+G D+ WF Y EV+R + E
Sbjct: 272 FSGEVSGAAPEDVDWFDYDEVLRGLDELE 300
>02_04_0187 - 20757713-20758632,20759056-20759812
Length = 558
Score = 27.5 bits (58), Expect = 8.3
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Frame = +3
Query: 90 DYYRDATHFKRVGDGPEYRFEIPHAKLNYTGAYSVVARNVHGEAKAVISLQIKVKDISST 269
DY+ K + F PH + N N HGE K + + +++
Sbjct: 135 DYFCSKEGLKEGERLTDANFNDPHTRTNCKAMVRFRVNN-HGEWKVIRLVSDHNHNLARP 193
Query: 270 EEAHHIRYGRVEVLPR---FERNLTDMLSC 350
EE H +R R + R E + D LSC
Sbjct: 194 EERHLLRSARSLIAGRSSSVETSKQDSLSC 223
>01_06_0848 +
32426550-32426613,32427013-32427167,32428470-32428526,
32428877-32428930,32429349-32429418,32429951-32432034
Length = 827
Score = 27.5 bits (58), Expect = 8.3
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = +1
Query: 1 RNSARGSSLSAKWLE-IRSPTCIGSG-TS*NRITTVTRLISNASEMGRSTDLRYLTRN*T 174
R+ +RGSSL+ W E P + + R S + +G+ D + L+R +
Sbjct: 128 RSISRGSSLTVDWAEDAEFPNWVDQDILEGEELQESKRWWSQSRSLGQQGDAKPLSRTSS 187
Query: 175 IPEPTL*WRETSTEKPKRSSPFRS 246
P+ L R + +S PF S
Sbjct: 188 YPQQPLQHRASEPIIAPQSPPFTS 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,153,049
Number of Sequences: 37544
Number of extensions: 341090
Number of successful extensions: 885
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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