Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0726
(585 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18730.1 68418.m02222 hypothetical protein predicted proteins... 29 1.7
At3g50140.1 68416.m05481 expressed protein contains Pfam profile... 29 2.3
At5g66210.2 68418.m08341 calcium-dependent protein kinase family... 29 3.0
At5g66210.1 68418.m08340 calcium-dependent protein kinase family... 29 3.0
At2g28050.1 68415.m03401 pentatricopeptide (PPR) repeat-containi... 28 4.0
At3g13270.1 68416.m01670 hypothetical protein contains similarit... 28 5.3
At1g50040.1 68414.m05615 expressed protein 28 5.3
At5g59180.1 68418.m07417 DNA-directed RNA polymerase II identica... 27 7.0
At5g42920.2 68418.m05233 expressed protein 27 9.2
At5g42920.1 68418.m05232 expressed protein 27 9.2
At2g41800.1 68415.m05166 expressed protein contains Pfam profile... 27 9.2
At2g32290.1 68415.m03947 beta-amylase, putative / 1,4-alpha-D-gl... 27 9.2
At1g30010.1 68414.m03670 intron maturase, type II family protein... 27 9.2
>At5g18730.1 68418.m02222 hypothetical protein predicted proteins -
Arabidopsis thaliana
Length = 644
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 315 RFERNLTDMLSCDGDTVEFECQV-TGNPDPDIRWFHYAEVIRDCADFESSYDDGT 476
R E L D++ DT++++ Q+ T P D R + R C ++ S+ DDG+
Sbjct: 541 RLEFGLYDIVEILDDTLDYKVQLLTQQPVSDDRNDMEHRLFRACTEYTSNEDDGS 595
>At3g50140.1 68416.m05481 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 508
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 402 DIRWFHYAEVIRDCADFESSYDDGTARLKIKQVTAEDEGTYTCEASN 542
DIR+ HY ++I +S D RL ++V + E TY E SN
Sbjct: 406 DIRYLHYYDIIEHWLGNDSEVADVFNRL-CQEVAFDLENTYLSELSN 451
>At5g66210.2 68418.m08341 calcium-dependent protein kinase family
protein / CDPK family protein contains Pfam domains,
PF00069: Protein kinase domain and PF00036: EF hand
Length = 523
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Frame = -2
Query: 224 FGFSVDVSRHYRVGS--GIVQFRVRYLKSVLRPISD-----AFEMSRVTVVIRFQEVPEP 66
FG+S D HY +G G QF Y+ ++ RP D + S++ + I ++V
Sbjct: 52 FGYSKDFHDHYTIGKLLGHGQFGYTYV-AIHRPNGDRVAVKRLDKSKMVLPIAVEDVKRE 110
Query: 65 IHVGLRISNH 36
+ + + +S H
Sbjct: 111 VQILIALSGH 120
>At5g66210.1 68418.m08340 calcium-dependent protein kinase family
protein / CDPK family protein contains Pfam domains,
PF00069: Protein kinase domain and PF00036: EF hand
Length = 523
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Frame = -2
Query: 224 FGFSVDVSRHYRVGS--GIVQFRVRYLKSVLRPISD-----AFEMSRVTVVIRFQEVPEP 66
FG+S D HY +G G QF Y+ ++ RP D + S++ + I ++V
Sbjct: 52 FGYSKDFHDHYTIGKLLGHGQFGYTYV-AIHRPNGDRVAVKRLDKSKMVLPIAVEDVKRE 110
Query: 65 IHVGLRISNH 36
+ + + +S H
Sbjct: 111 VQILIALSGH 120
>At2g28050.1 68415.m03401 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 462
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -2
Query: 287 DVMCFFCRTYIFNFDLKGDDRFGFSVDVSRHYRVGSGIV-QFRVRYLKSVLRPIS 126
D+ + C + +FNF L+ F F D+ H + ++ + R Y K +L+P++
Sbjct: 58 DIKSWKCIS-LFNFILENPSLFSFQPDLRTHLSLTFRVLSERRFSYAKELLKPVA 111
>At3g13270.1 68416.m01670 hypothetical protein contains similarity
to replication protein A1
Length = 570
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = -2
Query: 251 NFDLK--GDDRFGFSVDVSRHYRVGSGIVQFRVRYLKSVLRPISDAFEMSRVTVVIRFQE 78
+FD++ D+R G ++ + +V G + R + VLR +S++F+ S+V V +F E
Sbjct: 161 DFDIRDASDERIGVTLWGTFAQQVYRGCNEAGARPVVCVLRNLSNSFDASQVFVNPQFPE 220
Query: 77 V 75
V
Sbjct: 221 V 221
>At1g50040.1 68414.m05615 expressed protein
Length = 460
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 126 GDGPEYRFEIPHAKLNYTGAYSVVARNVHGEAKAVISLQIKVKDISSTEEA 278
G G ++RF + A+ N S + V ++K +++ VK ++ TE+A
Sbjct: 375 GSGSDFRFSLSQAQQNLGFVMSTRVQGVEKQSKP--KVEVGVKHVTCTEDA 423
>At5g59180.1 68418.m07417 DNA-directed RNA polymerase II identical
to Swiss-Prot:P38421 DNA-directed RNA polymerase II 19
kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit
5) [Arabidopsis thaliana]
Length = 176
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -2
Query: 191 RVGSGIVQFRVRYLKSVLRPISDAFEMSRVTVVIRFQEVPEPIHVGLRISNHFALND 21
R G+G V F V+Y V RP + VT+V + E V + +S H +D
Sbjct: 60 RDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDD 116
>At5g42920.2 68418.m05233 expressed protein
Length = 819
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 417 HYAEVIRDCADFESSYDD 470
HY + I+ C DF+S Y D
Sbjct: 123 HYVKAIKACRDFKSKYPD 140
>At5g42920.1 68418.m05232 expressed protein
Length = 702
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 417 HYAEVIRDCADFESSYDD 470
HY + I+ C DF+S Y D
Sbjct: 6 HYVKAIKACRDFKSKYPD 23
>At2g41800.1 68415.m05166 expressed protein contains Pfam profile
PF04862: Protein of unknown function, DUF642
Length = 370
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 6 FGTRVIIECEVVGDPKPDVYWLRDFLKPDYYRDATHFK 119
F T ++I + P W+ + LKP Y D HFK
Sbjct: 216 FSTGILIPARIQDFISPLPGWIVESLKPVKYIDRRHFK 253
>At2g32290.1 68415.m03947 beta-amylase, putative /
1,4-alpha-D-glucan maltohydrolase, putative similar to
beta-amylase GI:13560977 from [Castanea crenata]
Length = 577
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 159 HAKLNYTGAYSVVARNVHGEAKAVISLQIKVKDISSTEEAHHIRYGRVEVLPRFERN 329
HA LN+T + +N AKA Q V+ + S+ I LPRF+RN
Sbjct: 403 HAILNFT---CLEMKNTEQPAKAKSGPQELVQQVLSSGWREGIEVAGENALPRFDRN 456
>At1g30010.1 68414.m03670 intron maturase, type II family protein
similar to SP|Q57005 Group II intron-encoded protein
ltrA {Lactococcus lactis subsp}; contains Pfam profiles
PF01348: Type II intron maturase, PF00078: Reverse
transcriptase (RNA-dependent DNA polymerase
Length = 711
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +3
Query: 45 DPKPDVYWLRDF 80
+PKPD YWLR F
Sbjct: 307 EPKPDPYWLRTF 318
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,789,328
Number of Sequences: 28952
Number of extensions: 270133
Number of successful extensions: 720
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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