Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0725
         (539 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    25   0.43 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   5.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   6.9  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   9.2  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 25.0 bits (52), Expect = 0.43
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 277 YRPGCAAIESVSSFLDG 227
           Y PGCA ++S S+ L G
Sbjct: 382 YLPGCAMVDSCSNILTG 398


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 302 NLLRMYEENQNVMVEALHKDLRRSKMEAILLE 397
           + L  +   QN+   ++H D  +S+ E  LL+
Sbjct: 423 DFLATFLSEQNIQSTSIHGDRYQSEREKALLD 454


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +1

Query: 250 FQSRHNQADRMAPSAAQEFVKNVRGKPKRHGG 345
           FQ+R ++  +M  +A      N  G P  H G
Sbjct: 169 FQNRRSKYKKMMKAAQVSGGNNNNGTPGGHSG 200


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 329 QNVMVEALHKDLRRSKMEAILLEVDYLINDLRN 427
           Q+  +E +H+   +  +   L EV +  N +RN
Sbjct: 74  QDNTIEMIHRGTFQGDIHRDLTEVYFSFNSVRN 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,922
Number of Sequences: 336
Number of extensions: 2628
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)