Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0725
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    32   0.062
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    28   0.77 
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.3  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    26   4.1  
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    25   5.4  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   5.4  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   7.2  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   7.2  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   7.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.5  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    25   9.5  

>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 31.9 bits (69), Expect = 0.062
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
 Frame = +2

Query: 227 AVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRRSKMEAILLEVDY 406
           AVQK +    R    P+   RQ  +NL  + ++N + +   + KDL + ++  + + V  
Sbjct: 9   AVQKRKKQKQRSVVDPVTRERQLKRNLADLEKDNFSDIRFEIPKDLLQRRV--LPISVRR 66

Query: 407 LINDLRNTLHYLDEW---------TKPEH-PPKGFVNI 490
           +++  +  ++YLDE           KP + PP+ F N+
Sbjct: 67  ILSSRKTFVNYLDETPNSRYNTCVAKPSYKPPRKFCNV 104


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 302 NLLRMYEENQNVMVEALHKDLRRSKMEAILLEVDYLINDLRNTL 433
           +LL++Y    +  +E + KDL RS  E    + +  IN LRN L
Sbjct: 249 HLLKVYSGQTSFSLEEIEKDLGRSLPEYPAYQNEEGINALRNVL 292


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 194 TSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQLKNL 307
           TSK  T SAA+   K  +   + T++PI    +++  L
Sbjct: 202 TSKPATTSAAQPSSKVEENMAKATSQPITTAEKEIPEL 239


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 180 TGILQHPNKRRCQLLRPSKKLETLSIAAQPGR*NGAVSSSRI 305
           +G+LQ  +KR      P K ++  S   QP R +GA S++ +
Sbjct: 138 SGLLQSKDKRSQSPHSPKKPVKNSSSRDQPVRNSGATSTASL 179


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 296 LKNLLRMYEENQNVMVEALHKDLRRSK-MEAILLEVDYLIND 418
           LKNLL + +++     EAL+K L  +K +  +L E + LIN+
Sbjct: 255 LKNLLEVKDKDVEGRNEALNKILHPAKNLVELLTEKENLINE 296


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 232 PKSSRHFQSRHNQADRMAP--SAAQEFVKNVRGKPKRHGGGPTQ 357
           PKSS HF  RH   DR     S ++ + +N   K K+   GP Q
Sbjct: 492 PKSSHHFDERHG-GDRHEKNLSNSRRYSRNKFHK-KKQSSGPFQ 533


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 402 STSSRMASILLRLRSLCRASTMTFWFSSYIL 310
           STSS M + L    SL   +  +FW SSY L
Sbjct: 762 STSSMMKTWLCAKFSLKETNKTSFWHSSYNL 792


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 371 SKMEAILLEVDYLINDLRNTLHYLDEWTK 457
           SKM  I ++VDY+  DL     YL ++ K
Sbjct: 243 SKMRRISIDVDYVDEDLNLINAYLSQFGK 271


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 344 EALHKDLRRSKMEAILLEVDYLIND 418
           +ALH  +R S  + +L   +Y+I D
Sbjct: 505 KALHPQVRHSNFQVLLTTYEYIIKD 529


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 431  LHYLDEWTKPEHPPKGFVNILDEVVI 508
            LH+ D+ T+  HP + +   +D+V I
Sbjct: 1095 LHFKDQATETSHPIRLYTRYIDKVYI 1120


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 353 HKDLRRSKMEAILLEVDYLINDLRNTLHYLDEWTKPE 463
           H D     ME I LE  +LIND+ +    ++E  + E
Sbjct: 56  HDDGNWQPMEVISLEPTHLINDIDDDNEIIEEKKETE 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,820
Number of Sequences: 5004
Number of extensions: 44241
Number of successful extensions: 112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)