Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0725
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.009
SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)               31   0.60 
SB_18027| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_5253| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_31305| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)          27   7.4  
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_51576| Best HMM Match : UPAR_LY6 (HMM E-Value=2.5)                  27   7.4  
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)                27   7.4  
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)                       27   9.8  

>SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 26/78 (33%), Positives = 45/78 (57%)
 Frame = +2

Query: 305 LLRMYEENQNVMVEALHKDLRRSKMEAILLEVDYLINDLRNTLHYLDEWTKPEHPPKGFV 484
           ++++ +++++ +V AL KDL + + E ++ E+    ND    L  L EW KP+    G V
Sbjct: 1   MVQLLDKHEDEIVAALKKDLCKPRQETVIAEILLAKNDAILALEKLSEWMKPQPVETGIV 60

Query: 485 NILDEVVIYNDPYGVVLV 538
           N +D   I N+P GV L+
Sbjct: 61  NKMDTCYIKNEPLGVALI 78


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
 Frame = +2

Query: 113 VSIQIDKVRGSNKSEXXXXXXXXXXLTTSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQ 292
           + +++D ++G ++ E               ++  +  +    A DT +RG    +E  ++
Sbjct: 97  LQLELDIMKGEHEMEITMLKKEIQAERVRLEQRKAKLDVADDASDTSSRGPYPAVEAIQE 156

Query: 293 QLKNLLRMYEENQNVMVEALHKDLRRS-----KMEAILLEVDYLINDLRNTLHYLDEWTK 457
           Q+ +L   YEE    + E L + + R+     K E    +    +N+L+NT     E  +
Sbjct: 157 QMSSLQANYEEEIQTVKEQLQEQMLRANEAVEKYEQQEYQFHENLNELKNTFAQEQEMMR 216

Query: 458 PEH 466
            EH
Sbjct: 217 EEH 219


>SB_55427| Best HMM Match : E-MAP-115 (HMM E-Value=0.077)
          Length = 599

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 20/65 (30%), Positives = 34/65 (52%)
 Frame = +2

Query: 191 TTSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRR 370
           TT  ++T+   E   K +  F +G    +E RRQ L++ L+  +E +     A  +  +R
Sbjct: 81  TTDDKRTIFTFE--DKRKQNFEKGRLE-LEKRRQDLQDKLKREKEEREAKERAEEERRQR 137

Query: 371 SKMEA 385
           +KMEA
Sbjct: 138 AKMEA 142


>SB_18027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 23/103 (22%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
 Frame = +2

Query: 197 SKQKTMSAAEAVQKARDTFNR--GTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRR 370
           +K+  ++A +  ++     N+  GT   IE++R+ L+      E  +N+   A  K L+ 
Sbjct: 57  NKRTALNALKRKKRLEKQLNQIDGTLSTIEFQREALEGANTNTEVLKNMSYAA--KALKA 114

Query: 371 SKMEAILLEVDYLINDLRNTLHYLDEWTKPEHPPKGFVNILDE 499
           +  +  + +V  +++D++      DE ++    P GF   +DE
Sbjct: 115 AHQQLDVDDVHDMMDDIQEQTELADEISRAISEPAGFGMDIDE 157


>SB_5253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 314 MYEENQNVMVEALHKDLRRSK--MEAILLEVDYLINDLRNTLHYLDEWTKPEHPPK 475
           +Y E   +      KDL  S   + ++++   YL ++  +   + DEW K E PPK
Sbjct: 68  LYAERLRLKPTTSSKDLSSSDVFLISVMVASKYLYDEGEDEEVFNDEWAKAEDPPK 123


>SB_31305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 313

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 242 ELFGRPQQLTSSFVWML*DSRFHSSYCCFHFYYFRALY--RFVCSH 111
           EL  + QQ    F+W+   S  HSS+    +YY  +L   RFV S+
Sbjct: 263 ELKRKQQQEVDIFIWLDHSSCDHSSFTLIGYYYSVSLQIDRFVSSN 308


>SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)
          Length = 655

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +2

Query: 422 RNTLHYLDEWTKPEHPPKGFVNILDEVVIYNDPYGVVLV 538
           ++ ++ L+E   P  P K F N+ DE++  N+ YG +++
Sbjct: 501 KDFIYTLNEKGVPRIPIKLFQNVCDEILPRNEAYGKMVL 539


>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 277  RMAPSAAQEFVKNVRGKPKRHGGGPTQGSQTKQNGSHSTRS 399
            R  P AA    ++V  K +R    P  GS++ +  S STR+
Sbjct: 878  RTQPQAASHVYRSVMIKNRRRAPIPNTGSESSRGDSGSTRT 918


>SB_51576| Best HMM Match : UPAR_LY6 (HMM E-Value=2.5)
          Length = 204

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 497 RLECSRSLLEDVPA*STHPNNAECSSNH 414
           RL+C R +L D+     H  N EC+ +H
Sbjct: 46  RLQCWRRVLHDLSGEHQHVLNKECTKSH 73


>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
          Length = 1706

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 263  TTRPIEWRRQQLKNLLRMYEENQNVMV 343
            +TRP+ WR   + +LLR Y E + V +
Sbjct: 1491 STRPLTWRDSFVLDLLRKYRERRYVNI 1517


>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
          Length = 1649

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 191  TTSKQKTMSAAEAVQKARDTFNR 259
            T S +K   +AEA++KARDTF +
Sbjct: 1314 TASGKKVEISAEALKKARDTFQQ 1336


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,807,275
Number of Sequences: 59808
Number of extensions: 326212
Number of successful extensions: 964
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)