Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0724
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.1  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    27   2.6  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    26   3.5  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.6  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    26   4.6  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   6.1  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   8.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 25  RHLRNDINQRREAMAMIDDEEDPFILTGLL-FEWFEGLKQPILDKDDLSII 174
           R  R+  N +R      DDEE PF +  LL  E  E ++  + ++DD  ++
Sbjct: 174 REKRDRKNFKRLRFPPFDDEEPPFSIDQLLDLEPLEAIRMDLDEEDDAPVM 224


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/70 (21%), Positives = 33/70 (47%)
 Frame = +1

Query: 37  NDINQRREAMAMIDDEEDPFILTGLLFEWFEGLKQPILDKDDLSIIVGHSCNVESCVLAM 216
           N+  +  + +  + D   P+   G  FE  + L +  L  +D ++++GH+   E C +  
Sbjct: 257 NEGTEPHDNLTFMTDLGTPYYSLGNEFERKQILDEYGLLANDENLVIGHTLRAEYCFMFD 316

Query: 217 QMEDVMLVEY 246
           + + + L  Y
Sbjct: 317 ESDILQLRNY 326


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +1

Query: 289 KKIEILKRILASLTHQAVTINNKSLPRRDFQKLRDGTCSQVINFMLRMIVELQKDMVKPG 468
           ++I +LK    S  H AV    +S  +R F    D   + ++N +  + VEL +  VK  
Sbjct: 672 QRISLLKMATYSKLHHAVEGVKESFEQRKFFNAADIMKNFLLNDLSSVYVELTRFDVKDS 731

Query: 469 RDDA 480
           +  A
Sbjct: 732 KSSA 735


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 1   RGEKQTRLRHLRNDINQRREAMAMIDDEEDPFILTGLLFEWFEGL 135
           + E +  L H+R  I +RR+ ++  D E+  +I+  L+    +G+
Sbjct: 774 QNEARRGLEHIRECIEKRRDIVSREDHEDWDYIVLKLINAKMQGM 818


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 176 TMIERSSLSSIGCFRPSNHSNSKPV 102
           ++I  SS  S+ C+R S+H    PV
Sbjct: 222 SVIPDSSFHSVACYRASSHYKEAPV 246


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 358 FCCLSSRLDGLRK 320
           FCCL + +DGLRK
Sbjct: 94  FCCLVTLIDGLRK 106


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
 Frame = +1

Query: 13  QTRLRHLRNDINQRREAMAMIDDEEDPFILTGLLFEWFEGLKQPILDKDDLSIIVGHSCN 192
           + +LR+    + Q  E   +++DE        LL      +K+ + +K      V H C+
Sbjct: 63  EQQLRNSEKKLLQSNERYDLLEDERK------LLENELSQIKEYLREKSSSYDTVLHDCS 116

Query: 193 -VESCVLAM-QMEDVMLVEYL-LRFVIRLRPLAANKKIEILKRI---LASLTHQAVTINN 354
            ++S   A+ Q +D  L +   L+ ++  +     KKI I+K +   LAS THQ + + +
Sbjct: 117 SLKSVNEALKQAQDQNLKQTAQLQNLLSDKEKEVEKKITIIKDLKDALASSTHQVLELQH 176

Query: 355 KSLPRRDFQ 381
               +   Q
Sbjct: 177 TQQEKASLQ 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,297,546
Number of Sequences: 5004
Number of extensions: 45703
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)