Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0724
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0309 + 27762613-27763070,27763940-27764060,27764168-277642...    29   2.0  
12_01_0473 + 3708770-3710026                                           29   3.5  
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859...    29   3.5  
09_02_0181 - 5425833-5426527,5426667-5429397                           28   6.2  
04_04_0883 + 29079315-29079715,29080918-29081038,29081127-290812...    27   8.2  

>02_05_0309 +
           27762613-27763070,27763940-27764060,27764168-27764287,
           27764633-27764863,27764964-27765503
          Length = 489

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +1

Query: 28  HLRNDINQRREAMAMIDDEEDPFILTGLLFEWFEGLKQPILDKDDLSIIVGHSCNVESCV 207
           H+R  +N     M ++ D  D   LTGL+  WF  L   +LD      ++ H    E C 
Sbjct: 209 HVREQLN-----MGVVPDGVDMHCLTGLIKAWFRELPSGVLDSLTPEQVM-HCNTEEECA 262

Query: 208 L 210
           L
Sbjct: 263 L 263


>12_01_0473 + 3708770-3710026
          Length = 418

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 534 SNSFPSLHFQPPARYHDISIVAAWLHHIL 448
           ++ FP+L   P  + HD+S +  + HH+L
Sbjct: 196 ASPFPALALHPHHQQHDVSAMLGYHHHLL 224


>11_06_0561 -
           24984960-24985205,24985283-24985354,24985906-24985977,
           24986612-24986782,24987464-24987653,24987733-24987976,
           24988162-24988474,24988687-24989517,24989628-24989672,
           24989677-24989790,24989877-24990371,24990627-24990824,
           24990902-24991357
          Length = 1148

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/80 (26%), Positives = 38/80 (47%)
 Frame = +1

Query: 145 ILDKDDLSIIVGHSCNVESCVLAMQMEDVMLVEYLLRFVIRLRPLAANKKIEILKRILAS 324
           I  K  L++    S   + C LA+ +E    +  L+  +  +  L +N  IEIL ++L+ 
Sbjct: 515 ICSKSKLAVFSFSSFKEKVCALAVDVEKCSRI--LIDSLSDI--LLSNYNIEILNKLLSG 570

Query: 325 LTHQAVTINNKSLPRRDFQK 384
           L+H    I N  + +   +K
Sbjct: 571 LSHLEDRIKNSDITQSGVEK 590


>09_02_0181 - 5425833-5426527,5426667-5429397
          Length = 1141

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 85  EDPFILTGLLFEWFEGLKQPILDKDDLSIIVGHSCNVES 201
           ED FI T  L + + GL   ++DKDD+      +CNV S
Sbjct: 412 EDVFIATDELDQCWMGLG--LVDKDDIQSSYREACNVRS 448


>04_04_0883 +
           29079315-29079715,29080918-29081038,29081127-29081246,
           29081646-29081876,29081951-29082517
          Length = 479

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +1

Query: 70  MIDDEEDPFILTGLLFEWFEGLKQPILDKDDLSIIVGHSCNVESCVLAMQM 222
           ++ DE D   L GL+  WF  L   +LD      ++ H    E C L   M
Sbjct: 199 VVPDEVDLHCLAGLIKAWFRELPTGVLDSLTPEQVM-HCNTEEDCALLASM 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,915,507
Number of Sequences: 37544
Number of extensions: 298605
Number of successful extensions: 762
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)