Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0724
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28725| Best HMM Match : V-set (HMM E-Value=0.5)                     29   2.1  
SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)                     29   2.7  
SB_5722| Best HMM Match : Ion_trans (HMM E-Value=0)                    29   2.7  
SB_13651| Best HMM Match : I-set (HMM E-Value=4e-17)                   28   4.8  
SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_58182| Best HMM Match : NifT (HMM E-Value=7.9)                      28   6.3  
SB_43971| Best HMM Match : I-set (HMM E-Value=1.7e-09)                 28   6.3  
SB_53160| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_17836| Best HMM Match : rve (HMM E-Value=7.3e-14)                   27   8.4  

>SB_28725| Best HMM Match : V-set (HMM E-Value=0.5)
          Length = 219

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
 Frame = +1

Query: 76  DDEEDPFILTGLLFEWFEGLKQPILDKDDLSIIVGHSC----NVESCVLAMQMEDVMLV- 240
           +  +D F+ +G+L EWF+GL +     +D   I         +  SC   +++ +V +V 
Sbjct: 31  NQNKDDFVSSGVLMEWFQGLNKVSSTPNDTDTIYKGRLYFYGDFTSCSGVVEIRNVSVVH 90

Query: 241 --EYLLRFVIRLRPLAANKKIEI 303
              YL++      PL+ +   E+
Sbjct: 91  EKSYLVKIRTSSSPLSPSASWEL 113


>SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)
          Length = 998

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 94  FILTGLLFEWFEGLKQPILDKDDLSIIVGHSCNVE 198
           F+L G L  +FE      LDKD + +I+  +CNVE
Sbjct: 311 FVLKGNLLYYFERR----LDKDPIGVIILENCNVE 341


>SB_5722| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1236

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = +1

Query: 172 IVGHSCNVESC----VLAMQMEDVMLVEYL--LRFVIRLRPLAANKKIEILKRILASLTH 333
           IVG+  N+ +C    ++A+ +  +   E L   R +  LRPL A  + E +K ++ SL H
Sbjct: 585 IVGYFSNLWNCLDSFIVAISLASISGNENLNAFRSLRALRPLRAISRFEGMKIVVNSLVH 644

Query: 334 QAVTINN 354
               I+N
Sbjct: 645 AVPAISN 651


>SB_13651| Best HMM Match : I-set (HMM E-Value=4e-17)
          Length = 333

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 76  DDEEDPFILTGLLFEWFEGLKQPILDKDDLSII 174
           +  +D F+ +G+L EWF+G  + +   +D   I
Sbjct: 70  NQNKDDFVSSGVLMEWFQGSSKVLSTPNDTDTI 102


>SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1172

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +1

Query: 1    RGEKQTRLRHLRNDINQRREAMAMIDDEEDPFILTGLLFEWFEGLKQPILDK 156
            R + Q     +RN +N+R+ A+A+       F+++ L+  +F  + QPI+ K
Sbjct: 1061 RFQHQIHHMEMRNHVNERKVAIAV------AFVISTLMIGYFPRIIQPIISK 1106


>SB_58182| Best HMM Match : NifT (HMM E-Value=7.9)
          Length = 165

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/47 (25%), Positives = 27/47 (57%)
 Frame = +1

Query: 253 RFVIRLRPLAANKKIEILKRILASLTHQAVTINNKSLPRRDFQKLRD 393
           R V+R+ PLA +  + ++  I+ S++  ++ + NK+    D  + +D
Sbjct: 102 RLVVRVSPLARSGALPVVCNIITSVSVGSICVRNKNQSALDSYQEKD 148


>SB_43971| Best HMM Match : I-set (HMM E-Value=1.7e-09)
          Length = 240

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 10  KQTRLRHLRNDINQRREAMAMIDDEEDPFILTGLLFEWFEGLKQPILDKDD 162
           K T L H  + I    +   + +  +D F+ +G+L EWF+G  + +   +D
Sbjct: 42  KCTGLYH-SDRIAYYHQLFGISNQNKDDFVSSGVLMEWFQGRSKVLSTPND 91


>SB_53160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +1

Query: 76  DDEEDPFILTGLLFEWFEGLKQPILDKDDLSII 174
           +  +D F+ +G++ EWF+G  + +   +D   I
Sbjct: 81  NQNKDDFVSSGVMMEWFQGRSKVLCAPNDTDTI 113


>SB_17836| Best HMM Match : rve (HMM E-Value=7.3e-14)
          Length = 713

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 185 LVMLNHAFWPCKWKM*CSWNTSFVS**GSARW 280
           L+ +N+ +W C+     S+ T+F++  G  RW
Sbjct: 3   LITVNYGYWHCELDEESSYMTTFITVNGRFRW 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,174,977
Number of Sequences: 59808
Number of extensions: 352307
Number of successful extensions: 815
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)