Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0720
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0004 + 26990250-26990516,26990877-26990931,26991286-269914...    29   4.3  
01_05_0502 + 22771428-22771466,22772327-22772430,22773043-227731...    28   5.6  

>05_07_0004 +
           26990250-26990516,26990877-26990931,26991286-26991461,
           26991702-26991923,26992001-26992239,26992437-26992962,
           26993042-26993315,26993391-26994009,26994082-26994121,
           26994263-26994310,26994548-26994814,26994892-26995155,
           26995260-26995904
          Length = 1213

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -2

Query: 395 YFDYF*IVKYASKRISTDLGFSRQIMLNIIERIL*SRPASRNKTSECTWHVVEGRIFSFF 216
           YF  F ++ +   ++S   G+S   ++NI+  I+    A  + T  CT    EGRI ++ 
Sbjct: 283 YFSSFGLIVWYGSKLSLSRGYSGADIMNILFGIMIGARALGDAT-PCTAAFEEGRIAAYR 341

Query: 215 FF 210
            F
Sbjct: 342 LF 343


>01_05_0502 +
           22771428-22771466,22772327-22772430,22773043-22773129,
           22773212-22773287,22773393-22773467,22773639-22773692,
           22773745-22773918,22774002-22774061,22774135-22774251,
           22774448-22774542,22774811-22775013,22775177-22775274,
           22775451-22775587,22776154-22776219,22776300-22776465,
           22776537-22776659,22776763-22776845,22776943-22777084,
           22777334-22777363,22777587-22777657,22777742-22778333
          Length = 863

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 244 TCQVHSDVLLREAGRDHKILSIIFSIIWRENPRS 345
           TC++  DV+LR    D +++ ++FS +  ++P S
Sbjct: 87  TCEI--DVILRTLVEDEQLMELLFSFVKSDHPHS 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,087,159
Number of Sequences: 37544
Number of extensions: 221944
Number of successful extensions: 282
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)