Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0719
         (554 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39170| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   5e-10
SB_35256| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   4e-09
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)                48   5e-06
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   6e-05
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      39   0.002
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)                  38   0.004
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)                36   0.017
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)                35   0.039
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)                 34   0.068
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)                      34   0.068
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)                      34   0.068
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.12 
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.48 
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)                31   0.48 
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_23434| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)               27   7.8  

>SB_39170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 61.3 bits (142), Expect = 5e-10
 Identities = 26/50 (52%), Positives = 38/50 (76%)
 Frame = +1

Query: 346 TPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQVPI 495
           T +ENR+Y+LKI CG  YP +PPT +F+S+I+MN VNS+ G  D+R+  +
Sbjct: 1   TVFENRIYNLKIVCGPNYPQKPPTVKFVSKINMNGVNSK-GETDDREAEL 49


>SB_35256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 23/39 (58%), Positives = 32/39 (82%)
 Frame = +1

Query: 346 TPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQ 462
           T +ENR+Y+LKI CG  YP +PPT +F+S+I+MN VNS+
Sbjct: 1   TVFENRIYNLKIVCGPNYPQKPPTVKFVSKINMNGVNSK 39


>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
          Length = 190

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
 Frame = +1

Query: 328 IIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMNCVNSQTGLVDNRQVPILAR 504
           +IG   TPY   ++ L I+   RYP EPP  RF++ I H N  +S    +D  ++P    
Sbjct: 2   LIGAEGTPYHKGIFKLDIQIPERYPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGM 61

Query: 505 WQRDYTIKTVLQEV 546
           W+    I +VL  +
Sbjct: 62  WKPALNISSVLSTI 75


>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 295 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN 447
           DD  L  W  M++GPP T YE   +   +     YP  PPT  FIS I H N
Sbjct: 358 DDEDLYKWEIMVVGPPGTYYEEGYFKASMVFPKEYPQRPPTLTFISDIWHPN 409


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
 Frame = +1

Query: 283  LESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN---- 447
            +E  D+     W   I GPP T Y    +   +     YP  PPT RF++++ H N    
Sbjct: 1146 VEVPDESNTFEWDVAIFGPPGTLYAGGYFKAHMSFPHDYPYSPPTFRFLTKMWHPNIYES 1205

Query: 448  ---CVNSQTGLVDNRQVPIL--ARWQRDYTIKTVLQEV 546
               C++     VD+ Q   L   RW     ++T+L  V
Sbjct: 1206 GDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSV 1243


>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
          Length = 841

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = +1

Query: 298 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPP 414
           D T T   G I GPP TP+E   Y+L I     YP  PP
Sbjct: 683 DETFTKLKGEIRGPPETPFEGGTYNLDIVIPETYPFNPP 721


>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
          Length = 739

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 325 MIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS 432
           MI GP  TPY++ +++  I     YPD PP+  ++S
Sbjct: 639 MIEGPAGTPYDHGLFAFDILLPANYPDAPPSFHYLS 674


>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
          Length = 181

 Score = 35.1 bits (77), Expect = 0.039
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 307 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPP 414
           L  W   I+GPP + YE  ++ L I   T YP +PP
Sbjct: 51  LYEWYSTILGPPGSVYEGGVFFLDIHFPTDYPFKPP 86


>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
          Length = 200

 Score = 34.3 bits (75), Expect = 0.068
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +1

Query: 274 SWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPP 414
           S G + DD   L  W   I+GPP + YE  ++ L I   + YP +PP
Sbjct: 156 SAGPKGDD---LYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFKPP 199


>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 226

 Score = 34.3 bits (75), Expect = 0.068
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +1

Query: 274 SWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPP 414
           S G + DD   L  W   I+GPP + YE  ++ L I   + YP +PP
Sbjct: 116 SAGPKGDD---LYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFKPP 159


>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 145

 Score = 34.3 bits (75), Expect = 0.068
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 295 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 441
           D+  + +W G+I+ P   PY    + ++I     YP +PP   F ++I+
Sbjct: 19  DESNILYWQGLIV-PEMPPYNKGAFRIEICFPAEYPFKPPKITFKTKIY 66


>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 295 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS 432
           DD+   H   +I GP  TPYE   +   I C   YP  PP  + ++
Sbjct: 8   DDIPKIH--ALITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMT 51


>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 20/80 (25%), Positives = 34/80 (42%)
 Frame = +1

Query: 307 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQ 486
           L  W   + GPP T +    Y  +I     YP +PP+   ++      +  +  L  +  
Sbjct: 38  LFEWHFTVRGPPDTEFAGGRYHGRIILPPEYPMKPPSIMLLTPNGRFEIGKKICLSMSAH 97

Query: 487 VPILARWQRDYTIKTVLQEV 546
            P    WQ  ++I+TVL  +
Sbjct: 98  HP--ETWQPSWSIRTVLMAI 115


>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
          Length = 204

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 355 ENRMYSLKIECGTRYPDEPPTARFISRI-HMNCVNSQTGLVDNRQVPILARWQRDYTIKT 531
           ENR+   K+E  T  P EPP  RF++ I H N  +S    +D  ++P    W+    I +
Sbjct: 29  ENRID--KLEAST--PFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGMWKPALNISS 84

Query: 532 VLQEV 546
           VL  +
Sbjct: 85  VLSTI 89


>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
 Frame = +1

Query: 268 TISWG-LESDDDMT----LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPT-ARFI 429
           T S+G +ES  ++T    L  +     GP  TPYE  ++ ++++   +YP + P+ A F 
Sbjct: 29  TDSFGRIESKHEVTILGGLNEFIVKFFGPVGTPYEGGVWKVRVDLPEKYPFKSPSIANFT 88

Query: 430 SRIHMNCV 453
             I + CV
Sbjct: 89  IEISV-CV 95


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 525  DGIVTLPSSKNWDLSIIHKSSLTIDTVHMNPRNKAGC 415
            + +  L SS+N   +++HK   T+D +    RN  GC
Sbjct: 3867 ESVTALESSENAVATLMHKIDGTLDNLSDEDRNSIGC 3903


>SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 510 LPSSKNWDLSIIHKSSLTIDTVHM-NPRNKAGCWWLI 403
           LPS+K W  +I H  SL    V + +P N    WW +
Sbjct: 789 LPSTKGWKNAIRHTLSLRQRFVRLPDPGNPYRSWWTV 825


>SB_23434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 164

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 426 KAGCWWLIRVSCSTFNFKGVHSILVGCPW 340
           + GC W++   C       ++ ++VGC W
Sbjct: 20  ECGCGWVVAAECGCGGCGQLNVVVVGCGW 48


>SB_12635| Best HMM Match : Chlam_PMP (HMM E-Value=0.018)
          Length = 3561

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -3

Query: 429 NKAGCWWLIRVSCSTFNFKGVHSILVGCPWWANNHSSPMSKSHIIIAFKTPRNGSIAH 256
           N + C W++ ++ S  +      ILV CP     +S  M  +     F    NG ++H
Sbjct: 189 NPSSCHWMLDLASSNLSLSSGAKILVSCPINLTANSLTMQTNS---QFNIFGNGKVSH 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,537,250
Number of Sequences: 59808
Number of extensions: 355906
Number of successful extensions: 924
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)