Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0717
         (601 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   3.4  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   4.6  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.6  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   6.0  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 93  TPRNS*RPQWLGYSNCN*SEIPGHDLIFL 179
           T RN+ + QWL  S+   SEIP     FL
Sbjct: 291 TFRNTKKLQWLDTSHNRISEIPNDLFRFL 319


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 283 VLSSDGNYALSASWDKTLRLWDL 351
           VLS  G   +S +W  +LR  D+
Sbjct: 260 VLSDHGTQFISNTWQNSLRAADI 282


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
 Frame = +1

Query: 19  GCYRT*RF--RESSLFKPFSKMSETLKLRGTLRGHNGWVTQIATNPKYPDMI 168
           GC  T  F  + + L+K   K    L L G L     +      NP +  MI
Sbjct: 272 GCLSTRLFYYQLTDLYKKIKKAFPPLSLHGQLLWREFFYCAATKNPNFDKMI 323


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 208 LTRDENNYGIPQKRLYGHSHFISDVVLSS-DGNYALSAS 321
           LT  +N YG+P   +   +H ++    SS  G   LS S
Sbjct: 58  LTIIQNGYGLPGHTIIASNHHLAKSDTSSASGREDLSPS 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,566
Number of Sequences: 336
Number of extensions: 2984
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)