Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0717
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   5.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.3  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   5.3  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   5.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.0  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 5/21 (23%), Positives = 17/21 (80%)
 Frame = -1

Query: 586 TRHYLTVVN*EGYREYILRLL 524
           +++Y+T+++  G+R++I  ++
Sbjct: 10  SKYYVTIIDAPGHRDFIKNMI 30


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 166 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDV 282
           I+SS  +KT+     +K   + NNY    K+LY + ++I  +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 166 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDV 282
           I+SS  +KT+     +K   + NNY    K+LY + ++I  +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 166 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDV 282
           I+SS  +KT+     +K   + NNY    K+LY + ++I  +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 5/21 (23%), Positives = 17/21 (80%)
 Frame = -1

Query: 586 TRHYLTVVN*EGYREYILRLL 524
           +++Y+T+++  G+R++I  ++
Sbjct: 26  SKYYVTIIDAPGHRDFIKNMI 46


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 5/21 (23%), Positives = 17/21 (80%)
 Frame = -1

Query: 586 TRHYLTVVN*EGYREYILRLL 524
           +++Y+T+++  G+R++I  ++
Sbjct: 83  SKYYVTIIDAPGHRDFIKNMI 103


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 5/20 (25%), Positives = 16/20 (80%)
 Frame = -1

Query: 583 RHYLTVVN*EGYREYILRLL 524
           ++Y+T+++  G+R++I  ++
Sbjct: 84  KYYVTIIDAPGHRDFIKNMI 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,675
Number of Sequences: 438
Number of extensions: 3559
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)