Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0715
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    84   1e-17
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    23   2.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   3.5  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   8.1  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   8.1  

>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 84.2 bits (199), Expect = 1e-17
 Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
 Frame = +2

Query: 68  AGCHSPVSLLALCLLAHHYRHCNTLIATFGDLEITVEFLTEVDKLVQLIELPIFAYLRLE 247
           A CH+ +++ +LCLL+ +Y H   L++ F ++E  ++ L ++DKLVQLIE P+F Y+RL+
Sbjct: 609 AWCHNSIAVFSLCLLSQNYEHAANLLSVFAEIEFNIDMLIQLDKLVQLIESPVFTYMRLQ 668

Query: 248 LV-GEHSXXXXXXXXXXXXXXPQSDAFHALRARLHCLPPP 364
           L+  E                PQS AF  LR RL C   P
Sbjct: 669 LLEPEKYPYLHKALYGILMLLPQSSAFRTLRDRLQCSSTP 708


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 22.6 bits (46), Expect(2) = 2.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 311 QSDAFHALRARLHCLPPP 364
           +S A++  R+RLH + PP
Sbjct: 154 ESSAYYDSRSRLHGIQPP 171



 Score = 22.6 bits (46), Expect(2) = 2.2
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +2

Query: 422 EPLGLRRPASTVPRRAGTTPPVPRARPLPGQAVRQALLVAADTAPCTLSSYK 577
           +P   RR  S  PRR      V  +R +  +  R+     A   P + S+Y+
Sbjct: 169 QPPPKRRTLSPPPRRLADPVVVGSSRYVEEEVYRRPPYTLASEVPSSASAYQ 220


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -1

Query: 333 SAWKASDCGSSMSRPNSAARRPALCSPTSSRRR*ANMGNSMSCTSLSTSVRNSTVISRSP 154
           S+  AS+  +S S  +S+       + TSS        NS + +SL++S  NST  + + 
Sbjct: 182 SSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATAT 241

Query: 153 KVAMS 139
             ++S
Sbjct: 242 SSSIS 246


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 76  PQPRVAAGAVSAGAPLPALQHAHRHLRRP 162
           P+P +++  V +  P P  QH H H R P
Sbjct: 149 PEP-LSSNHVRSCPPFPPTQHHHPHTRPP 176


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 87   TGLWHPAAVQRQEPGAAPRLAAVLQP 10
            TG+  P  +Q Q  G  P+   ++QP
Sbjct: 1173 TGMMQPTGMQPQATGIMPQATGMMQP 1198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,756
Number of Sequences: 5004
Number of extensions: 26244
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)