Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0715
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.7  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   2.2  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   2.2  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   2.2  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   2.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   6.7  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   6.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.7  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 89  SLLALCLLAHHYRHC 133
           S+ ALC   HH+ HC
Sbjct: 462 SVDALCNTLHHWHHC 476


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 474 QHRQYRALDRSRDKLYDK 527
           ++R+YR  DR  +KLY++
Sbjct: 8   RNREYRKKDRQYEKLYNE 25


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 474 QHRQYRALDRSRDKLYDK 527
           ++R+YR  DR  +KLY++
Sbjct: 8   RNREYRKKDRQYEKLYNE 25


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 474 QHRQYRALDRSRDKLYDK 527
           ++R+YR  DR  +KLY++
Sbjct: 8   RNREYRKKDRQYEKLYNE 25


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 474 QHRQYRALDRSRDKLYDK 527
           ++R+YR  DR  +KLY++
Sbjct: 8   RNREYRKKDRQYEKLYNE 25


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +2

Query: 383  RGDEREGSEAADDEPLGLRRPASTVPRRAGTTPPVPRARPLPGQAVRQALLV 538
            RG ER+ S   D  P          P  +  T  VP+ + LP  + +  L V
Sbjct: 1245 RGQERQRSLFKDSSPATALMLQHAPPAYSCGTVSVPQQQQLPPSSPQPRLTV 1296


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 507 RDKLYDKPYS*PPTQHPVLYLAIS 578
           R+KL       PP Q+P ++L +S
Sbjct: 811 REKLSSSQPMQPPQQNPYMFLPVS 834


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 474 QHRQYRALDRSRDKLYDK 527
           ++R+Y+  DR  +KLY++
Sbjct: 8   RNREYKEKDRRYEKLYNE 25


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 422 EPLGLRRP 445
           EPLGLRRP
Sbjct: 474 EPLGLRRP 481


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 177 STVISRSPKVAMSVLQC 127
           +T+ +RSP+ +  +LQC
Sbjct: 755 TTITARSPQGSQGLLQC 771


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,447
Number of Sequences: 438
Number of extensions: 2066
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)