BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= P5PG0715 (582 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g01690.2 68415.m00097 expressed protein 82 3e-16 At2g01690.1 68415.m00096 expressed protein 82 3e-16 At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 31 0.42 At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 31 0.74 At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 31 0.74 At1g63480.1 68414.m07178 DNA-binding family protein contains a A... 29 2.3 At1g72740.1 68414.m08411 DNA-binding family protein / histone H1... 29 3.0 At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 29 3.0 At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 29 3.0 At3g44750.1 68416.m04817 histone deacetylase, putative (HD2A) co... 28 5.2 At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica... 28 5.2 At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 28 5.2 At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 28 5.2 At1g18620.1 68414.m02321 expressed protein 28 5.2 At2g33320.1 68415.m04084 C2 domain-containing protein low simila... 27 6.9 At4g27850.1 68417.m03999 proline-rich family protein contains pr... 27 9.1 At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family... 27 9.1 At1g77740.1 68414.m09051 1-phosphatidylinositol-4-phosphate 5-ki... 27 9.1 At1g01830.1 68414.m00102 armadillo/beta-catenin repeat family pr... 27 9.1 >At2g01690.2 68415.m00097 expressed protein Length = 744 Score = 81.8 bits (193), Expect = 3e-16 Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 2/97 (2%) Frame = +2 Query: 74 CHSPVSLLALCLLAHHYRHCNTLIATFGDLEITVEFLTEVDKLVQLIELPIFAYLRLELV 253 CHSP+++++LCLLA Y+H + +I + + +I V+FL ++DKL++L+E PIF YLRL+L+ Sbjct: 514 CHSPMAIISLCLLAQAYQHASVVIQSLVEEDINVKFLVQLDKLIRLLETPIFTYLRLQLL 573 Query: 254 --GEHSXXXXXXXXXXXXXXPQSDAFHALRARLHCLP 358 G ++ QS AF LR RL +P Sbjct: 574 EPGRYTWLLKTLYGLLMLLPQQSAAFKILRTRLKTVP 610 >At2g01690.1 68415.m00096 expressed protein Length = 743 Score = 81.8 bits (193), Expect = 3e-16 Identities = 39/97 (40%), Positives = 61/97 (62%), Gaps = 2/97 (2%) Frame = +2 Query: 74 CHSPVSLLALCLLAHHYRHCNTLIATFGDLEITVEFLTEVDKLVQLIELPIFAYLRLELV 253 CHSP+++++LCLLA Y+H + +I + + +I V+FL ++DKL++L+E PIF YLRL+L+ Sbjct: 513 CHSPMAIISLCLLAQAYQHASVVIQSLVEEDINVKFLVQLDKLIRLLETPIFTYLRLQLL 572 Query: 254 --GEHSXXXXXXXXXXXXXXPQSDAFHALRARLHCLP 358 G ++ QS AF LR RL +P Sbjct: 573 EPGRYTWLLKTLYGLLMLLPQQSAAFKILRTRLKTVP 609 >At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to hydroxyproline-rich glycoprotein DZ-HRGP from Volvox carteri f. nagariensis GP|6523547; contains Pfam profile PF00234 Protease inhibitor/seed storage/LTP family Length = 375 Score = 31.5 bits (68), Expect = 0.42 Identities = 18/51 (35%), Positives = 23/51 (45%) Frame = +2 Query: 356 PPPHQPHRPRGDEREGSEAADDEPLGLRRPASTVPRRAGTTPPVPRARPLP 508 PP P P + + A+D+P P ST P TTPP +PLP Sbjct: 46 PPQPDPQPPTPPTFQPAPPANDQPPP--PPQSTSPPPVATTPPALPPKPLP 94 Score = 27.1 bits (57), Expect = 9.1 Identities = 18/52 (34%), Positives = 19/52 (36%) Frame = +2 Query: 353 LPPPHQPHRPRGDEREGSEAADDEPLGLRRPASTVPRRAGTTPPVPRARPLP 508 L PP P A PL PA T P TTPP +PLP Sbjct: 97 LSPPQTTPPPPPAITPPPPPAITPPLSPPPPAITPPPPLATTPPALPPKPLP 148 >At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 WD-40 repeats domain (PF00400) (6 weak) Length = 1120 Score = 30.7 bits (66), Expect = 0.74 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +1 Query: 73 VPQPRVAAGAVSAGAPLPALQHAHRHLRRPRDNRGV 180 VP P V+ G ++ GA P++Q A +H R P N V Sbjct: 260 VPHPAVSGGPIALGA--PSIQAALKHPRTPPSNSAV 293 >At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 WD-40 repeats domain (PF00400) (6 weak) Length = 1120 Score = 30.7 bits (66), Expect = 0.74 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +1 Query: 73 VPQPRVAAGAVSAGAPLPALQHAHRHLRRPRDNRGV 180 VP P V+ G ++ GA P++Q A +H R P N V Sbjct: 260 VPHPAVSGGPIALGA--PSIQAALKHPRTPPSNSAV 293 >At1g63480.1 68414.m07178 DNA-binding family protein contains a AT hook motif (DNA binding motifs with a preference for A/T rich regions), Pfam:PF02178 Length = 361 Score = 29.1 bits (62), Expect = 2.3 Identities = 17/59 (28%), Positives = 22/59 (37%) Frame = +2 Query: 356 PPPHQPHRPRGDEREGSEAADDEPLGLRRPASTVPRRAGTTPPVPRARPLPGQAVRQAL 532 PPP P P + G EP+ + + P P R RP PG +Q L Sbjct: 88 PPPPPPEEPMVKRKRGRPRKYGEPMVSNKSRDSSPMSDPNEPKRARGRP-PGTGRKQRL 145 >At1g72740.1 68414.m08411 DNA-binding family protein / histone H1/H5 family protein similar to DNA-binding protein PcMYB1 [Petroselinum crispum] GI:2224897; contains Pfam profiles PF00538: linker histone H1 and H5 family, PF00249: Myb-like DNA-binding domain Length = 287 Score = 28.7 bits (61), Expect = 3.0 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = +2 Query: 419 DEPLGLRRPASTVPRRAGTTPPVPRARPLPGQAV 520 D P A T+PR T PP P R LP + + Sbjct: 79 DTPAADANDAVTIPRPIPTIPPPPGRRTLPSELI 112 >At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10 WD-40 repeats (PF00400) (1 weak) Length = 1131 Score = 28.7 bits (61), Expect = 3.0 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +1 Query: 73 VPQPRVAAGAVSAGAPLPALQHAHRHLRRPRDN 171 VP P V+AGA++ G P++ A +H R P N Sbjct: 260 VPHPAVSAGAIALGG--PSIPAALKHPRTPPTN 290 >At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10 WD-40 repeats (PF00400) (1 weak) Length = 1131 Score = 28.7 bits (61), Expect = 3.0 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +1 Query: 73 VPQPRVAAGAVSAGAPLPALQHAHRHLRRPRDN 171 VP P V+AGA++ G P++ A +H R P N Sbjct: 260 VPHPAVSAGAIALGG--PSIPAALKHPRTPPTN 290 >At3g44750.1 68416.m04817 histone deacetylase, putative (HD2A) contains Pfam domain, PF00096: Zinc finger, C2H2 type; identical to cDNA putative histone deacetylase (HD2A) GI:11066134 Length = 245 Score = 27.9 bits (59), Expect = 5.2 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = +2 Query: 389 DEREGSEAADDEPLGLRRPASTVPRRAGTTPPVP 490 D+ +G ++ ++EP ++PAS+ R TTP P Sbjct: 151 DDSDGEDSEEEEPTP-KKPASSKKRANETTPKAP 183 >At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase domain-containing protein similar to SP|P41410 DNA repair protein rhp54 (RAD54 homolog) {Schizosaccharomyces pombe}; contains PFam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain Length = 1132 Score = 27.9 bits (59), Expect = 5.2 Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 2/37 (5%) Frame = -3 Query: 253 HQLQ--AQVGEYGQLNELHQLVHLRQELHGYLEVAEG 149 H+L +Q GE+G++NE +++V L+ + ++ V EG Sbjct: 806 HELSKCSQEGEHGRVNEENRIVDLKAMIAHFVHVHEG 842 >At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing protein Length = 809 Score = 27.9 bits (59), Expect = 5.2 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = +2 Query: 440 RPASTVPRRAGTTPPVPRARPLPGQA 517 RP P RA PP RARP+P A Sbjct: 540 RPPLPPPARARPLPPPARARPMPPPA 565 >At1g20130.1 68414.m02518 family II extracellular lipase, putative contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566) Length = 1006 Score = 27.9 bits (59), Expect = 5.2 Identities = 18/68 (26%), Positives = 24/68 (35%) Frame = +2 Query: 356 PPPHQPHRPRGDEREGSEAADDEPLGLRRPASTVPRRAGTTPPVPRARPLPGQAVRQALL 535 PP QP P + +P +P P TPP P+ +P P + A Sbjct: 35 PPKPQPKPPPAPSPSPCPSPPPKP----QPKPVPPPACPPTPPKPQPKPAPPPEPKPAPP 90 Query: 536 VAADTAPC 559 A PC Sbjct: 91 PAPKPVPC 98 >At1g18620.1 68414.m02321 expressed protein Length = 978 Score = 27.9 bits (59), Expect = 5.2 Identities = 15/53 (28%), Positives = 27/53 (50%) Frame = +2 Query: 368 QPHRPRGDEREGSEAADDEPLGLRRPASTVPRRAGTTPPVPRARPLPGQAVRQ 526 Q +P D+R A+ + LR+ S P + T+P R+RP ++++Q Sbjct: 565 QQMKPEHDKRSRPPASPSDSSKLRKQISRQPVESTTSPGGRRSRPRDQRSLQQ 617 >At2g33320.1 68415.m04084 C2 domain-containing protein low similarity to splicing coactivator subunit SRm300 [Homo sapiens] GI:6649242; contains Pfam profile PF00168: C2 domain Length = 602 Score = 27.5 bits (58), Expect = 6.9 Identities = 14/48 (29%), Positives = 21/48 (43%) Frame = +2 Query: 359 PPHQPHRPRGDEREGSEAADDEPLGLRRPASTVPRRAGTTPPVPRARP 502 P H RPR + + + D P + PRR +TP + + RP Sbjct: 300 PNHNVLRPRSERQHEPDFIDQSPFRSNDRSRKTPRR--STPMIEKPRP 345 >At4g27850.1 68417.m03999 proline-rich family protein contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 577 Score = 27.1 bits (57), Expect = 9.1 Identities = 15/50 (30%), Positives = 18/50 (36%) Frame = +2 Query: 353 LPPPHQPHRPRGDEREGSEAADDEPLGLRRPASTVPRRAGTTPPVPRARP 502 LPPP P G + D PL L P + G P+P P Sbjct: 174 LPPPPSPSPTPGPDSPLPSPGPDSPLPLPGPPPSPSPTPGPDSPLPSPGP 223 >At2g31270.1 68415.m03818 hydroxyproline-rich glycoprotein family protein Length = 571 Score = 27.1 bits (57), Expect = 9.1 Identities = 20/68 (29%), Positives = 33/68 (48%) Frame = -1 Query: 309 GSSMSRPNSAARRPALCSPTSSRRR*ANMGNSMSCTSLSTSVRNSTVISRSPKVAMSVLQ 130 GSS S P + +R + SP+S + +S++ + + N SR+ VA+SV + Sbjct: 5 GSSRSIPFKSKKRLVMDSPSSKSQTGNPNPSSVALPTPEKPLENMLSRSRNRSVALSVKE 64 Query: 129 CR*WCASR 106 R SR Sbjct: 65 IRQAAGSR 72 >At1g77740.1 68414.m09051 1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative strong similarity to phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains Pfam profiles PF01504: Phosphatidylinositol-4-phosphate 5-Kinase, PF02493: MORN repeat Length = 754 Score = 27.1 bits (57), Expect = 9.1 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 6/48 (12%) Frame = +2 Query: 383 RGDEREGSEAADD------EPLGLRRPASTVPRRAGTTPPVPRARPLP 508 RGDE + E DD P+ + T R T PPV +PLP Sbjct: 30 RGDEEKTEERRDDLLLLALTPMVRSKSQGTTRRVTPTPPPVDVEKPLP 77 >At1g01830.1 68414.m00102 armadillo/beta-catenin repeat family protein armadillo/beta-catenin-like repeats, Pfam:PF00514 Length = 574 Score = 27.1 bits (57), Expect = 9.1 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = -1 Query: 555 GAVSAATSRACRTAC-PGSGRARGTGGVVP 469 GA AA S CR AC P + R G G +P Sbjct: 429 GAQQAAASAICRFACSPETKRLVGESGCIP 458 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,423,502 Number of Sequences: 28952 Number of extensions: 158077 Number of successful extensions: 721 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 675 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 718 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1141585696 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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