Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0714
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361...    29   2.1  
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477...    29   2.7  
11_04_0014 - 12253341-12253358,12253520-12253729,12254388-122545...    28   4.8  
06_03_0157 + 17337641-17337896,17337975-17338082,17338643-173389...    28   4.8  
02_01_0090 - 637141-640263                                             28   6.3  
01_05_0176 - 18957676-18958067,18958139-18958242,18958358-189584...    28   6.3  
10_08_0887 - 21311301-21311828,21312001-21312110,21312215-21312392     27   8.4  

>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
            3611984-3612217,3614113-3614138,3614446-3614633,
            3615707-3617670,3617938-3618423,3618527-3618894
          Length = 2207

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 319  EAFEKCLKSGLTVFAQCAAATPVPLLNAMTEVGKSGS 429
            E    CL S L +   C  ++P+P+L A + +  SG+
Sbjct: 964  ETATHCLLSVLNIGLCCTKSSPIPILTACSSIDSSGN 1000


>07_03_1291 +
           25545749-25546262,25546989-25547669,25547693-25547751,
           25549152-25549242,25549330-25549743,25550191-25550243,
           25550947-25551177,25551492-25551708,25551790-25551890,
           25552446-25552532,25553536-25553676,25553839-25553961,
           25554070-25554522,25554931-25555308,25555410-25556060,
           25556264-25556368,25556482-25556707,25557204-25557241
          Length = 1520

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -2

Query: 479 YAASFSVCIWTTLMSRNDPLF---PTSVMA-LRRGTGVAAAHWANTVSPDLR 336
           + + F +C+WT    R+D +F   P S+ A L+RG   +   WA   +PD R
Sbjct: 341 FQSFFLLCLWTLWNHRHDVVFRERPPSISACLQRGLSESTL-WAAMFTPDDR 391


>11_04_0014 -
           12253341-12253358,12253520-12253729,12254388-12254523,
           12254631-12254752,12254789-12254842,12254872-12255161,
           12255737-12255948,12256008-12256475,12256560-12256856,
           12257467-12258329,12258417-12258490,12258616-12258650,
           12259024-12259087,12259452-12259733,12259870-12259946,
           12260045-12260325
          Length = 1160

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -3

Query: 412 LRSWH*EEAPAWRPRTGRTRSVRI*DISQTPPLRSNIQASCPG 284
           L SW     P W    G+ + + + D    P    + QA CPG
Sbjct: 160 LSSWMDGCEPGWACTVGKEQKINLQDAKDIPYRALDCQACCPG 202


>06_03_0157 +
           17337641-17337896,17337975-17338082,17338643-17338908,
           17339933-17340021,17340095-17340198,17340403-17340508,
           17340600-17340675,17340772-17340883,17341719-17342250,
           17343097-17343131,17343924-17343984,17344054-17344132,
           17344266-17344349
          Length = 635

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 136 VKLNLNNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQ 282
           +KL+       + +I+P  + L FG + SAF  + +D   F Y QSL +
Sbjct: 232 IKLHSKLERKKMHRIIP--NRLTFGSVRSAFDDIDADDPDFLYIQSLGE 278


>02_01_0090 - 637141-640263
          Length = 1040

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +1

Query: 361 AQCAAATPVPLLNAMTEVGKSGSLRDIKVV----HMHTEKDA 474
           A+ AAA P      + EVG  G LR   +V    +MH E DA
Sbjct: 748 AEAAAAAPELTAEVLKEVGLLGRLRHRNIVRLLGYMHNEADA 789


>01_05_0176 -
           18957676-18958067,18958139-18958242,18958358-18958483,
           18959495-18959628,18959757-18959894,18960835-18960964,
           18961316-18961357,18964741-18965024
          Length = 449

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -2

Query: 437 SRNDPLFPTSVMALRRGTGVAAA--HWANTVSPDLRHFSNASFAVEYSGFLSRGC 279
           S + P    +V A+   T  AAA    A +VS  LRH+    F +  +    +GC
Sbjct: 45  SSSAPTIAAAVPAVAEATAAAAAVSRQAGSVSDALRHYGRCYFELSKARLSFQGC 99


>10_08_0887 - 21311301-21311828,21312001-21312110,21312215-21312392
          Length = 271

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 316 LRSNIQASCPGAATTIVYT*SNFYPI 239
           +R N   SC G   T++ T  N+YP+
Sbjct: 97  IRCNKDPSCSGNIETVIITDMNYYPV 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,108,177
Number of Sequences: 37544
Number of extensions: 335386
Number of successful extensions: 976
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)