Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0714
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48196| Best HMM Match : AcetylCoA_hydro (HMM E-Value=1.5e-19)       50   2e-06
SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04)                    30   1.2  
SB_5217| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.2  
SB_12299| Best HMM Match : Lectin_C (HMM E-Value=1.9e-06)              29   2.1  
SB_2392| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  
SB_47166| Best HMM Match : DivIVA (HMM E-Value=0.23)                   27   8.6  
SB_33792| Best HMM Match : Ank (HMM E-Value=2.3e-15)                   27   8.6  
SB_13947| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_10403| Best HMM Match : Death (HMM E-Value=9.3e-08)                 27   8.6  
SB_9415| Best HMM Match : 7tm_1 (HMM E-Value=0.0054)                   27   8.6  

>SB_48196| Best HMM Match : AcetylCoA_hydro (HMM E-Value=1.5e-19)
          Length = 381

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 20/51 (39%), Positives = 34/51 (66%)
 Frame = +1

Query: 349 LTVFAQCAAATPVPLLNAMTEVGKSGSLRDIKVVHMHTEKDAAYVTPGMQG 501
           + VF   AAATP+PL+ AM + GK  +L++++V+H+H E +A +     +G
Sbjct: 2   MKVFVHSAAATPIPLVEAMAKWGKKANLQNVEVIHIHIEGNAEHTKEEYEG 52



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +2

Query: 491 ECKDIFRSVSLFMAANVRKSVAEGRSDAIPIF 586
           E + IFR  S F+ AN RK++ +GR+D  PIF
Sbjct: 49  EYEGIFRDNSFFIGANCRKAINDGRADCTPIF 80


>SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04)
          Length = 618

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +1

Query: 295 KPEYS--TAKEAFEKCLKSGLTVFAQCAAATPVPLLNAMTEVGKSGSLRDIKVVHMHTEK 468
           KP +S  TA++ F +CLKS L ++ Q   A  V   NA   VGK  S+    +    ++ 
Sbjct: 187 KPHFSGGTAEDIFARCLKS-LDIYWQNCVAFGVD--NASVNVGKRNSI----MTRGQSKN 239

Query: 469 DAAYVTPGMQGHI 507
           D  Y + G Q H+
Sbjct: 240 DVVYFS-GCQCHV 251


>SB_5217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -1

Query: 378 GGRALGEHGQSGFKTFLKRLLCGRIFRLPVQGLRQRLCIRKVTSIRFNTKE 226
           GG    E G  G+ +  + + CG+++R    G+RQ L + ++     ++K+
Sbjct: 20  GGNGSEEEGDIGYHSIGRNIKCGKLYRCDNSGIRQ-LYVSRICKYYTDSKQ 69


>SB_12299| Best HMM Match : Lectin_C (HMM E-Value=1.9e-06)
          Length = 180

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +3

Query: 357 VRPVRGRHAGASSQCHDRSRKKWIVARHQSRPYAHRKGCGICNPGNARTYSDRYRC 524
           V P+R  H G  ++   R         ++S  Y HR G   CN      Y +RY+C
Sbjct: 11  VLPLRVAHGGCGTKAEVRRSASVSTESYKSNAYCHR-GTDNCN--EEGWYQNRYKC 63


>SB_2392| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 474 GICNPGNARTYSDRYRCLWPRTSANQ*PKVAPTPFP 581
           G+ N    RT  + YR   P  S+N+     P PFP
Sbjct: 116 GVLNGVEFRTRHNDYRLYMPHRSSNEWHATEPIPFP 151


>SB_47166| Best HMM Match : DivIVA (HMM E-Value=0.23)
          Length = 235

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 220 NLTSRNEDSRLEEQFS*SQTSCYLNLVSHKA 128
           +L  ++E+  +EE+    QT C++N  SH+A
Sbjct: 69  DLQPQDEEEVIEEKLDDLQTQCHINTGSHEA 99


>SB_33792| Best HMM Match : Ank (HMM E-Value=2.3e-15)
          Length = 202

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = +1

Query: 268 QSLSQPLDRKPEYSTAKEAFEK-----CLKSGLTVFAQCAAATPVPLLNAMTEVGKSGSL 432
           QS S P+DR+      K+  +         SG+TV  QCA    +  +  + E+G   + 
Sbjct: 39  QSSSSPMDRETITKRLKKLMKNQDINAVTTSGVTVLTQCALDGILDTIKILVELGADVNK 98

Query: 433 RD 438
           RD
Sbjct: 99  RD 100


>SB_13947| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 166 QTSCYLNLVSHKAKGCRYYYF 104
           Q  C+ N+V+ + KGCR  Y+
Sbjct: 40  QFKCFRNIVNRERKGCRVKYY 60


>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1680

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +3

Query: 471  CGICNPGNARTYSDRYRCLWPRTSANQ*PKVAPTP 575
            CG C P N R Y +  RC  P   A       P P
Sbjct: 1617 CGGCTPKNERLYLEPARCTKPNQQAGIARNSIPKP 1651


>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1670

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = -1

Query: 579  GMASERPSATDLRTFAAINNDTDLNMSLHSRGYICRILFGVHMDDFDVSQRSTFSYFGHG 400
            G A  RP+    R  AA NN+T  +    SR Y  R L     D  + S  ++       
Sbjct: 1359 GSAGTRPTRQSPRKSAAKNNETPKSSRKGSRMYRERTLSRRKRDIGNSSNETSTDESPQR 1418

Query: 399  IEKR-HRRG-GRALGEHGQSGFKTF 331
            ++    RRG G+ALG+ G    + F
Sbjct: 1419 VKPHGARRGLGKALGQGGARNPRLF 1443


>SB_10403| Best HMM Match : Death (HMM E-Value=9.3e-08)
          Length = 302

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/74 (22%), Positives = 32/74 (43%)
 Frame = +1

Query: 256 FTYTQSLSQPLDRKPEYSTAKEAFEKCLKSGLTVFAQCAAATPVPLLNAMTEVGKSGSLR 435
           F+  + ++  LD+ PE        ++CL+S  TV  +C    P P +  + ++     L 
Sbjct: 114 FSIRRDMAMELDQDPE--KFNNVVQQCLESLSTVQIECLRRQPSPTMAFLDQLEAKMPLL 171

Query: 436 DIKVVHMHTEKDAA 477
            +K +    E   A
Sbjct: 172 SVKSISDACEMSGA 185


>SB_9415| Best HMM Match : 7tm_1 (HMM E-Value=0.0054)
          Length = 171

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = -2

Query: 476 AASFSVCI--WTTLMSRNDPLFPTSVMALRRGTGVAAAHWANTVSPDLRHFSNASF 315
           A+++++C+  +   ++  DPL   S+M  +R   + A  W  +V+  ++ F+NA++
Sbjct: 13  ASTYNLCVISFDRHVAVKDPLRYMSIMTKKRVITLIAITWFASVAFSVQSFTNANY 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,666,176
Number of Sequences: 59808
Number of extensions: 387333
Number of successful extensions: 969
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)